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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="other" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Advances in Molecular Oncology</journal-id><journal-title-group><journal-title xml:lang="en">Advances in Molecular Oncology</journal-title><trans-title-group xml:lang="ru"><trans-title>Успехи молекулярной онкологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2313-805X</issn><issn publication-format="electronic">2413-3787</issn><publisher><publisher-name xml:lang="en">Publishing House ABV Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">113</article-id><article-id pub-id-type="doi">10.17650/2313-805X-2017-4-4-8-16</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>REVIEW ARTICLES</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ОБЗОРНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="article-type"><subject></subject></subj-group></article-categories><title-group><article-title xml:lang="en">MOLECULAR GENETIC ASPECTS OF HEPATOCELLULAR CARCINOMA PATHOGENESIS AND CURRENT OPTIONS OF DRUG THERAPY</article-title><trans-title-group xml:lang="ru"><trans-title>МОЛЕКУЛЯРНО-ГЕНЕТИЧЕСКИЕ АСПЕКТЫ ПАТОГЕНЕЗА ГЕПАТОЦЕЛЛЮЛЯРНОЙ КАРЦИНОМЫ И СОВРЕМЕННЫЕ ВОЗМОЖНОСТИ ЛЕКАРСТВЕННОЙ ТЕРАПИИ</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Makarova</surname><given-names>A. S.</given-names></name><name xml:lang="ru"><surname>Макарова</surname><given-names>А. С.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>24 Kashirskoe Shosse, Moscow 115478</p></bio><bio xml:lang="ru"><p>Анна Сергеевна Макарова.</p><p>115478 Москва, Каширское шоссе, 24</p></bio><email>a.makarova.work@gmail.com</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Research Institute of Carcinogenesis, N.N. Blokhin National Medical Research Center of Oncology, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">НИИ канцерогенеза ФГБУ «Национальный медицинский исследовательский центр онкологии им. Н.Н. Блохина» Минздрава России</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2017-12-15" publication-format="electronic"><day>15</day><month>12</month><year>2017</year></pub-date><volume>4</volume><issue>4</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>8</fpage><lpage>16</lpage><history><date date-type="received" iso-8601-date="2017-12-02"><day>02</day><month>12</month><year>2017</year></date><date date-type="accepted" iso-8601-date="2017-12-02"><day>02</day><month>12</month><year>2017</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2017, Makarova A.S.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2017, Макарова А.С.</copyright-statement><copyright-year>2017</copyright-year><copyright-holder xml:lang="en">Makarova A.S.</copyright-holder><copyright-holder xml:lang="ru">Макарова А.С.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://umo.abvpress.ru/jour/article/view/113">https://umo.abvpress.ru/jour/article/view/113</self-uri><abstract xml:lang="en"><p>Liver cancer is widespread neoplasm type that ranks second among the causes of cancer-related mortality worldwide. Hepatocellular carcinoma (HCC) is the main form of liver cancer generally detected at advanced stages in most patients. HCC development is a result of accumulation of various somatic molecular alterations. Different HCC etiology and chronic liver diseases cause numerous and heterogeneous genetic and epigenetic aberrations that determine diverse gene expression alterations in HCC. Molecular heterogeneity limits the efficacy of targeted therapy that is currently the essential approach for advanced stage HCC treatment.</p><p>The present review considers the main genetic and epigenetic alterations detected in HCC, results of transcriptomic investigations and systems biology analysis of the data. Up-to-date information on application of targeted drugs and immune checkpoint inhibitors in HCC therapy are discussed.</p></abstract><trans-abstract xml:lang="ru"><p/><p>Опухоли печени являются одними из наиболее распространенных типов злокачественных новообразований и занимают 2-е место по числу летальных исходов. Гепатоцеллюлярная карцинома (ГК) – основная форма опухолей печени, которая выявляется чаще всего на поздних стадиях. Развитие ГК – результат накопления разнообразных соматических молекулярных нарушений. Хронические заболевания печени и другие этиологические факторы развития ГК приводят к многочисленным и гетерогенным генетическим и эпигенетическим нарушениям, определяющим разнообразные изменения экспрессии генов в ГК. Молекулярная гетерогенность ограничивает эффективность таргетной терапии, которая является основным способом лечения ГК на поздних стадиях заболевания.</p>В настоящем обзоре рассматриваются основные генетические и эпигенетические нарушения, наблюдаемые в ГК; приведены сведения об исследованиях транскриптома ГК и способах системно-биологического анализа данных. Представлена актуальная информация о вариантах таргетной терапии и иммунотерапии данного типа опухолей.</trans-abstract><kwd-group xml:lang="en"><kwd>hepatocarcinoma</kwd><kwd>next-generation sequencing</kwd><kwd>GSEA</kwd><kwd>SNEA</kwd><kwd>targeted therapy</kwd><kwd>immunotherapy</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>гепатокарцинома</kwd><kwd>секвенирование нового поколения</kwd><kwd>GSEA</kwd><kwd>SNEA</kwd><kwd>таргетная терапия</kwd><kwd>иммунотерапия</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><citation-alternatives><mixed-citation xml:lang="en">1. GBD 2013 Mortality and Causes of Death Collaborators. Global, regional, and national age-sex specific all-cause and cause-specific mortality for 240 causes of death, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013. Lancet 2015;385(9963):117–71. DOI: 10.1016/S0140-6736(17)31833-0. PMID: 28919115.</mixed-citation><mixed-citation xml:lang="ru">GBD 2013 Mortality and Causes of Death Collaborators. Global, regional, and national age-sex specific all-cause and cause-specific mortality for 240 causes of death, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013. Lancet 2015;385(9963):117–71. DOI: 10.1016/S0140-6736(17)31833-0. PMID: 28919115.</mixed-citation></citation-alternatives></ref><ref id="B2"><label>2.</label><citation-alternatives><mixed-citation xml:lang="en">2. Hamilton S.R., Aaltonen L.A. Pathology and genetics of tumours of the digestive system. Lyon: IARC Press, 2000.</mixed-citation><mixed-citation xml:lang="ru">Hamilton S.R., Aaltonen L.A. Pathology and genetics of tumours of the digestive system. Lyon: IARC Press, 2000.</mixed-citation></citation-alternatives></ref><ref id="B3"><label>3.</label><citation-alternatives><mixed-citation xml:lang="en">3. Marquardt J.U., Andersen J.B., Thorgeirsson S.S. Functional and genetic deconstruction of the cellular origin in liver cancer. Nat Rev Cancer 2015;15:653–67. DOI: 10.1038/nrc4017. PMID: 26493646.</mixed-citation><mixed-citation xml:lang="ru">Marquardt J.U., Andersen J.B., Thorgeirsson S.S. Functional and genetic deconstruction of the cellular origin in liver cancer. Nat Rev Cancer 2015;15:653–67. DOI: 10.1038/nrc4017. PMID: 26493646.</mixed-citation></citation-alternatives></ref><ref id="B4"><label>4.</label><citation-alternatives><mixed-citation xml:lang="en">4. Llovet J.M., Zucman-Rossi J., Pikarsky E. et al. Hepatocellular carcinoma. Nat Rev Dis Primers 2016;2:16018. DOI: 10.1038/nrdp.2016.18. PMID: 27158749.</mixed-citation><mixed-citation xml:lang="ru">Llovet J.M., Zucman-Rossi J., Pikarsky E. et al. Hepatocellular carcinoma. Nat Rev Dis Primers 2016;2:16018. DOI: 10.1038/nrdp.2016.18. PMID: 27158749.</mixed-citation></citation-alternatives></ref><ref id="B5"><label>5.</label><citation-alternatives><mixed-citation xml:lang="en">5. Zhang D.Y., Friedman S.L. Fibrosis-dependent mechanisms of hepatocarcinogenesis. Hepatology 2012;56:769–75. DOI: 10.1002/hep.25670. PMID: 22378017.</mixed-citation><mixed-citation xml:lang="ru">Zhang D.Y., Friedman S.L. Fibrosis-dependent mechanisms of hepatocarcinogenesis. Hepatology 2012;56:769–75. DOI: 10.1002/hep.25670. PMID: 22378017.</mixed-citation></citation-alternatives></ref><ref id="B6"><label>6.</label><citation-alternatives><mixed-citation xml:lang="en">6. Ghouri Y.A., Mian I., Rowe J.H. Review of hepatocellular carcinoma: epidemiology, etiology, and carcinogenesis. J Carcinog 2017;16:1. DOI: 10.4103/jcar.JCar_9_16.eCollection 2017. PMID: 28694740.</mixed-citation><mixed-citation xml:lang="ru">Ghouri Y.A., Mian I., Rowe J.H. Review of hepatocellular carcinoma: epidemiology, etiology, and carcinogenesis. J Carcinog 2017;16:1. DOI: 10.4103/jcar.JCar_9_16.eCollection 2017. PMID: 28694740.</mixed-citation></citation-alternatives></ref><ref id="B7"><label>7.</label><citation-alternatives><mixed-citation xml:lang="en">7. Лазаревич Н.Л. Молекулярные механизмы прогрессии опухолей печени. Успехи биологической химии 2004;(44):365–418. [Lazarevich N.L. Molecular mechanisms of progression of liver tumors. Uspekhi biologichesloy khimii = Successes of Biological Chemistry 2004;(44): 365–418. (In Russ.)].</mixed-citation><mixed-citation xml:lang="ru">Лазаревич Н.Л. Молекулярные механизмы прогрессии опухолей печени. Успехи биологической химии 2004;(44):365–418. [Lazarevich N.L. Molecular mechanisms of progression of liver tumors. Uspekhi biologichesloy khimii = Successes of Biological Chemistry 2004;(44): 365–418. (In Russ.)].</mixed-citation></citation-alternatives></ref><ref id="B8"><label>8.</label><citation-alternatives><mixed-citation xml:lang="en">8. Aravalli R.N., Cressman E.N., Steer C.J. Cellular and molecular mechanisms of hepatocellular carcinoma: an update. Arch Toxicol 2013;87(2):227–47. DOI: 10.1007/s00204-012-0931-2. PMID: 23007558.</mixed-citation><mixed-citation xml:lang="ru">Aravalli R.N., Cressman E.N., Steer C.J. Cellular and molecular mechanisms of hepatocellular carcinoma: an update. Arch Toxicol 2013;87(2):227–47. DOI: 10.1007/s00204-012-0931-2. PMID: 23007558.</mixed-citation></citation-alternatives></ref><ref id="B9"><label>9.</label><citation-alternatives><mixed-citation xml:lang="en">9. Giannelli G., Koudelkova P., Dituri F., Mikulits W. Role of epithelial to mesenchymal transition in hepatocellular carcinoma. J Hepatol 2016;65(4):798–808. DOI: 10.1016/j.jhep.2016.05.007. PMID: 27212245.</mixed-citation><mixed-citation xml:lang="ru">Giannelli G., Koudelkova P., Dituri F., Mikulits W. Role of epithelial to mesenchymal transition in hepatocellular carcinoma. J Hepatol 2016;65(4):798–808. DOI: 10.1016/j.jhep.2016.05.007. PMID: 27212245.</mixed-citation></citation-alternatives></ref><ref id="B10"><label>10.</label><citation-alternatives><mixed-citation xml:lang="en">10. Roessler S., Budhu A., Wang X.W. Deciphering cancer heterogeneity: the biological space. Front Cell Dev Biol 2014;(2):12. DOI: 10.3389/fcell.2014.00012. PMID: 25364720.</mixed-citation><mixed-citation xml:lang="ru">Roessler S., Budhu A., Wang X.W. Deciphering cancer heterogeneity: the biological space. Front Cell Dev Biol 2014;(2):12. DOI: 10.3389/fcell.2014.00012. PMID: 25364720.</mixed-citation></citation-alternatives></ref><ref id="B11"><label>11.</label><citation-alternatives><mixed-citation xml:lang="en">11. Alexandrov L.B., Nik-Zainal S., Wedge D.C. et al. Signatures of mutational processes in human cancer. Nature 2013;500(7463):415–21. DOI: 10.1038/nature12477. PMID: 23945592.</mixed-citation><mixed-citation xml:lang="ru">Alexandrov L.B., Nik-Zainal S., Wedge D.C. et al. Signatures of mutational processes in human cancer. Nature 2013;500(7463):415–21. DOI: 10.1038/nature12477. PMID: 23945592.</mixed-citation></citation-alternatives></ref><ref id="B12"><label>12.</label><citation-alternatives><mixed-citation xml:lang="en">12. Макарова А.С., Кустова И.Ф., Лазаревич Н.Л. Методы массового параллельного секверирования в идентификации молекулярно-генетических детерминант гепатоканцерогенеза. Молекулярная медицина 2015;(2):54–60. [Makarova A.S., Kustova I.F., Lazarevich N.L. Methods of next generation sequencing in the identification of molecular genetic determinants of hepatocarcinogenesis. Molekulyarnaya meditsyna = Molecular Medicine 2015;(2):54–60.(In Russ.)]</mixed-citation><mixed-citation xml:lang="ru">Макарова А.С., Кустова И.Ф., Лазаревич Н.Л. Методы массового параллельного секверирования в идентификации молекулярно-генетических детерминант гепатоканцерогенеза. Молекулярная медицина 2015;(2):54–60. [Makarova A.S., Kustova I.F., Lazarevich N.L. Methods of next generation sequencing in the identification of molecular genetic determinants of hepatocarcinogenesis. Molekulyarnaya meditsyna = Molecular Medicine 2015;(2):54–60.(In Russ.)]</mixed-citation></citation-alternatives></ref><ref id="B13"><label>13.</label><citation-alternatives><mixed-citation xml:lang="en">13. Xuan J., Yu Y., Qing T. et al. Nextgeneration sequencing in the clinic: promises and challenges. Cancer Lett 2013;340:284–95. DOI: 10.1016/j.canlet.2012.11.025. PMID: 23174106.</mixed-citation><mixed-citation xml:lang="ru">Xuan J., Yu Y., Qing T. et al. Nextgeneration sequencing in the clinic: promises and challenges. Cancer Lett 2013;340:284–95. DOI: 10.1016/j.canlet.2012.11.025. PMID: 23174106.</mixed-citation></citation-alternatives></ref><ref id="B14"><label>14.</label><citation-alternatives><mixed-citation xml:lang="en">14. Shibata T. Aburatani H. Exploration of liver cancer genomes. Gastroenterol Hepatol 2014;11(6):340–9. DOI: 10.1038/nrgastro. 2014.6. PMID: 24473361.</mixed-citation><mixed-citation xml:lang="ru">Shibata T. Aburatani H. Exploration of liver cancer genomes. Gastroenterol Hepatol 2014;11(6):340–9. DOI: 10.1038/nrgastro. 2014.6. PMID: 24473361.</mixed-citation></citation-alternatives></ref><ref id="B15"><label>15.</label><citation-alternatives><mixed-citation xml:lang="en">15. Schulze K., Imbeaud S., Letouzé E. et al. Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets. Nat Genet 2015;44:505–11. DOI: 10.1038/ng.3252. PMID: 25822088.</mixed-citation><mixed-citation xml:lang="ru">Schulze K., Imbeaud S., Letouzé E. et al. Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets. Nat Genet 2015;44:505–11. DOI: 10.1038/ng.3252. PMID: 25822088.</mixed-citation></citation-alternatives></ref><ref id="B16"><label>16.</label><citation-alternatives><mixed-citation xml:lang="en">16. Cancer Genome Atlas Research Network. Comprehensive and integrative genomic characterization of hepatocellular carcinoma. Cell 2017;169(7): 1327–41.e23. DOI: 10.1016/j.cell.2017.05.046. PMID: 28622513.</mixed-citation><mixed-citation xml:lang="ru">Cancer Genome Atlas Research Network. Comprehensive and integrative genomic characterization of hepatocellular carcinoma. Cell 2017;169(7): 1327–41.e23. DOI: 10.1016/j.cell.2017.05.046. PMID: 28622513.</mixed-citation></citation-alternatives></ref><ref id="B17"><label>17.</label><citation-alternatives><mixed-citation xml:lang="en">17. Fujimoto A., Totoki Y., Abe T. et al. Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Nat Genet 2012;44:760–4. DOI: 10.1038/ng.2291. PMID: 22634756.</mixed-citation><mixed-citation xml:lang="ru">Fujimoto A., Totoki Y., Abe T. et al. Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Nat Genet 2012;44:760–4. DOI: 10.1038/ng.2291. PMID: 22634756.</mixed-citation></citation-alternatives></ref><ref id="B18"><label>18.</label><citation-alternatives><mixed-citation xml:lang="en">18. Totoki Y., Tatsuno K., Covington K.R. et al. Trans-ancestry mutational landscape of hepatocellular carcinoma genomes. Nat Genet 2014;46(12):1267–73. DOI: 10.1038/ng.3126. PMID: 25362482.</mixed-citation><mixed-citation xml:lang="ru">Totoki Y., Tatsuno K., Covington K.R. et al. Trans-ancestry mutational landscape of hepatocellular carcinoma genomes. Nat Genet 2014;46(12):1267–73. DOI: 10.1038/ng.3126. PMID: 25362482.</mixed-citation></citation-alternatives></ref><ref id="B19"><label>19.</label><citation-alternatives><mixed-citation xml:lang="en">19. Guichard C., Amaddeo G., Imbeaud S. et al. Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma. Nat Genet 2012;44:694–8. DOI: 10.1038/ng. 2256. PMID: 22561517.</mixed-citation><mixed-citation xml:lang="ru">Guichard C., Amaddeo G., Imbeaud S. et al. Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma. Nat Genet 2012;44:694–8. DOI: 10.1038/ng. 2256. PMID: 22561517.</mixed-citation></citation-alternatives></ref><ref id="B20"><label>20.</label><citation-alternatives><mixed-citation xml:lang="en">20. Huang J., Deng Q., Wang Q. et al. Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma. Nat Genet 2012;(44):1117–21. DOI: 10.1038/ng.2391. PMID: 22922871.</mixed-citation><mixed-citation xml:lang="ru">Huang J., Deng Q., Wang Q. et al. Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma. Nat Genet 2012;(44):1117–21. DOI: 10.1038/ng.2391. PMID: 22922871.</mixed-citation></citation-alternatives></ref><ref id="B21"><label>21.</label><citation-alternatives><mixed-citation xml:lang="en">21. Herceg Z., Paliwal A. Epigenetic mechanisms in hepatocellular carcinoma: how environmental factors influence the epigenome. Mutat Res 2011; 727:55–61. DOI: 10.1016/j.mrrev 2011.04.001. PMID: 21514401.</mixed-citation><mixed-citation xml:lang="ru">Herceg Z., Paliwal A. Epigenetic mechanisms in hepatocellular carcinoma: how environmental factors influence the epigenome. Mutat Res 2011; 727:55–61. DOI: 10.1016/j.mrrev 2011.04.001. PMID: 21514401.</mixed-citation></citation-alternatives></ref><ref id="B22"><label>22.</label><citation-alternatives><mixed-citation xml:lang="en">22. Wahid B., Ali A., Rafique S., Idrees M. New insights into the epigenetics of hepatocellular carcinoma. Biomed Res Int 2017;2017:1609575. DOI: 10.1155/2017/1609575. PMID: 28401148.</mixed-citation><mixed-citation xml:lang="ru">Wahid B., Ali A., Rafique S., Idrees M. New insights into the epigenetics of hepatocellular carcinoma. Biomed Res Int 2017;2017:1609575. DOI: 10.1155/2017/1609575. PMID: 28401148.</mixed-citation></citation-alternatives></ref><ref id="B23"><label>23.</label><citation-alternatives><mixed-citation xml:lang="en">23. Gao F., Xia Y., Wang J. et al. Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma. Genome Biol 2014;15(12):533. DOI: 10.1186/s13059-014-0533-9. PMID: 25517360.</mixed-citation><mixed-citation xml:lang="ru">Gao F., Xia Y., Wang J. et al. Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma. Genome Biol 2014;15(12):533. DOI: 10.1186/s13059-014-0533-9. PMID: 25517360.</mixed-citation></citation-alternatives></ref><ref id="B24"><label>24.</label><citation-alternatives><mixed-citation xml:lang="en">24. Gao F., Liang H., Lu H. et al. Global in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach. Clin Epigenetics 2015;7:86. DOI: 10.1186/s13148-015-0121-1. PMID: 26300991.</mixed-citation><mixed-citation xml:lang="ru">Gao F., Liang H., Lu H. et al. Global in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach. Clin Epigenetics 2015;7:86. DOI: 10.1186/s13148-015-0121-1. PMID: 26300991.</mixed-citation></citation-alternatives></ref><ref id="B25"><label>25.</label><citation-alternatives><mixed-citation xml:lang="en">25. Villanueva A., Portela A., Sayols S. et al. DNA methylation-based prognosis and epidrivers in hepatocellular carcinoma. Hepatology 2015;61(6):1945–56. DOI: 10.1002/hep.27732. PMID: 25645722.</mixed-citation><mixed-citation xml:lang="ru">Villanueva A., Portela A., Sayols S. et al. DNA methylation-based prognosis and epidrivers in hepatocellular carcinoma. Hepatology 2015;61(6):1945–56. DOI: 10.1002/hep.27732. PMID: 25645722.</mixed-citation></citation-alternatives></ref><ref id="B26"><label>26.</label><citation-alternatives><mixed-citation xml:lang="en">26. Lu C., Ward P.S., Kapoor G.S. IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature 2012;483(7390):474–8. DOI: 10.1038/nature10860. PMID: 22343901.</mixed-citation><mixed-citation xml:lang="ru">Lu C., Ward P.S., Kapoor G.S. IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature 2012;483(7390):474–8. DOI: 10.1038/nature10860. PMID: 22343901.</mixed-citation></citation-alternatives></ref><ref id="B27"><label>27.</label><citation-alternatives><mixed-citation xml:lang="en">27. Zhu H., Han C., Wu T. MiR-17–92 cluster promotes hepatocarcinogenesis. Carcinogenesis 2015;36(10):1213–22. DOI: 10.1093/carcin/bgv112. PMID: 26233958.</mixed-citation><mixed-citation xml:lang="ru">Zhu H., Han C., Wu T. MiR-17–92 cluster promotes hepatocarcinogenesis. Carcinogenesis 2015;36(10):1213–22. DOI: 10.1093/carcin/bgv112. PMID: 26233958.</mixed-citation></citation-alternatives></ref><ref id="B28"><label>28.</label><citation-alternatives><mixed-citation xml:lang="en">28. Chen M., Hu W., Xiong C.L. et al. miR-22 targets YWHAZ to inhibit metastasis of hepatocellular carcinoma and its downregulation predicts a poor survival. Oncotarget 2016;7(49):80751–64. DOI: 10.18632/oncotarget.13037. PMID: 27811373.</mixed-citation><mixed-citation xml:lang="ru">Chen M., Hu W., Xiong C.L. et al. miR-22 targets YWHAZ to inhibit metastasis of hepatocellular carcinoma and its downregulation predicts a poor survival. Oncotarget 2016;7(49):80751–64. DOI: 10.18632/oncotarget.13037. PMID: 27811373.</mixed-citation></citation-alternatives></ref><ref id="B29"><label>29.</label><citation-alternatives><mixed-citation xml:lang="en">29. Ji J., Zheng X., Forgues M. et al. Identification of microRNAs specific for epithelial cell adhesion moleculepositive tumor cells in hepatocellular carcinoma. Hepatology 2015;62(3): 829–40. DOI: 10.1002/hep.27886. PMID: 25953724.</mixed-citation><mixed-citation xml:lang="ru">Ji J., Zheng X., Forgues M. et al. Identification of microRNAs specific for epithelial cell adhesion moleculepositive tumor cells in hepatocellular carcinoma. Hepatology 2015;62(3): 829–40. DOI: 10.1002/hep.27886. PMID: 25953724.</mixed-citation></citation-alternatives></ref><ref id="B30"><label>30.</label><citation-alternatives><mixed-citation xml:lang="en">30. Caruso S., Calderaro J., Letouzé E. et al. Germline and somatic DICER1 mutations in familial and sporadic liver tumors. J Hepatol 2017;66(4):734–42. DOI: 10.1016/j. jhep.2016.12.010. PMID: 28012864.</mixed-citation><mixed-citation xml:lang="ru">Caruso S., Calderaro J., Letouzé E. et al. Germline and somatic DICER1 mutations in familial and sporadic liver tumors. J Hepatol 2017;66(4):734–42. DOI: 10.1016/j. jhep.2016.12.010. PMID: 28012864.</mixed-citation></citation-alternatives></ref><ref id="B31"><label>31.</label><citation-alternatives><mixed-citation xml:lang="en">31. Huang X.P., Hou J., Shen X.Y. et al. MicroRNA-486-5p, which is down regulated in hepatocellular carcinoma, suppresses tumor growth by targeting PIK3R1. FEBS J 2015;282(3):579–94. DOI: 10.1111/febs.13167. PMID: 25475121.</mixed-citation><mixed-citation xml:lang="ru">Huang X.P., Hou J., Shen X.Y. et al. MicroRNA-486-5p, which is down regulated in hepatocellular carcinoma, suppresses tumor growth by targeting PIK3R1. FEBS J 2015;282(3):579–94. DOI: 10.1111/febs.13167. PMID: 25475121.</mixed-citation></citation-alternatives></ref><ref id="B32"><label>32.</label><citation-alternatives><mixed-citation xml:lang="en">32. Li D., Liu X., Lin L. et al. MicroRNA-99a inhibits hepatocellular carcinoma growth and correlates with prognosis of patients with hepatocellular carcinoma. J Biol Chem 2011;286(42):36677–85. DOI: 10.1074/jbc.M111.270561. PMID: 21878637.</mixed-citation><mixed-citation xml:lang="ru">Li D., Liu X., Lin L. et al. MicroRNA-99a inhibits hepatocellular carcinoma growth and correlates with prognosis of patients with hepatocellular carcinoma. J Biol Chem 2011;286(42):36677–85. DOI: 10.1074/jbc.M111.270561. PMID: 21878637.</mixed-citation></citation-alternatives></ref><ref id="B33"><label>33.</label><citation-alternatives><mixed-citation xml:lang="en">33. Zucman-Rossi J., Nault J.C., Llovet J.M. Genetic landscape and biomarkers of hepatocellular carcinoma. Gastroenterology 2015;149(5):1226–39.e4. DOI: 10.1053/j.gastro.2015.05.061. PMID: 26099527.</mixed-citation><mixed-citation xml:lang="ru">Zucman-Rossi J., Nault J.C., Llovet J.M. Genetic landscape and biomarkers of hepatocellular carcinoma. Gastroenterology 2015;149(5):1226–39.e4. DOI: 10.1053/j.gastro.2015.05.061. PMID: 26099527.</mixed-citation></citation-alternatives></ref><ref id="B34"><label>34.</label><citation-alternatives><mixed-citation xml:lang="en">34. Huang Q., Lin B., Liu H. et al. RNA-Seq analyses generate comprehensive transcriptomic landscape in hepatocellular carcinoma. PLoS One 2011;6(10):e26168. DOI: 10.1371/journal.pone.0026168. PMID: 22043308.</mixed-citation><mixed-citation xml:lang="ru">Huang Q., Lin B., Liu H. et al. RNA-Seq analyses generate comprehensive transcriptomic landscape in hepatocellular carcinoma. PLoS One 2011;6(10):e26168. DOI: 10.1371/journal.pone.0026168. PMID: 22043308.</mixed-citation></citation-alternatives></ref><ref id="B35"><label>35.</label><citation-alternatives><mixed-citation xml:lang="en">35. Marquardt J.U., Seo D., Andersen J.B. et al. Sequential transcriptome analysis of human liver cancer indicates late stage acquisition of malignant traits. J Hepatol 2014;60(2):346–53. DOI: 10.1016/j.jhep.2013.10.014. PMID: 24512821.</mixed-citation><mixed-citation xml:lang="ru">Marquardt J.U., Seo D., Andersen J.B. et al. Sequential transcriptome analysis of human liver cancer indicates late stage acquisition of malignant traits. J Hepatol 2014;60(2):346–53. DOI: 10.1016/j.jhep.2013.10.014. PMID: 24512821.</mixed-citation></citation-alternatives></ref><ref id="B36"><label>36.</label><citation-alternatives><mixed-citation xml:lang="en">36. Ho D.W., Kai A.K., Ng I.O. TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways in hepatocellular. Front Med 2015;9(3):322–30. DOI: 10.1007/s11684-015-0408-9. PMID: 26276037.</mixed-citation><mixed-citation xml:lang="ru">Ho D.W., Kai A.K., Ng I.O. TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways in hepatocellular. Front Med 2015;9(3):322–30. DOI: 10.1007/s11684-015-0408-9. PMID: 26276037.</mixed-citation></citation-alternatives></ref><ref id="B37"><label>37.</label><citation-alternatives><mixed-citation xml:lang="en">37. Lee T.I., Young R.A. Transcriptional regulation and its misregulation in disease. Cell 2013;152(6):1237–51. DOI: 10.1016/j.cell.2013.02.014. PMID: 23498934.</mixed-citation><mixed-citation xml:lang="ru">Lee T.I., Young R.A. Transcriptional regulation and its misregulation in disease. Cell 2013;152(6):1237–51. DOI: 10.1016/j.cell.2013.02.014. PMID: 23498934.</mixed-citation></citation-alternatives></ref><ref id="B38"><label>38.</label><citation-alternatives><mixed-citation xml:lang="en">38. Gonda T.J., Ramsay R.G. Directly targeting transcriptional dysregulation in cancer. Nat Rev Cancer 2015;15(11):686–94. DOI: 10.1038/nrc4018. PMID: 26493648.</mixed-citation><mixed-citation xml:lang="ru">Gonda T.J., Ramsay R.G. Directly targeting transcriptional dysregulation in cancer. Nat Rev Cancer 2015;15(11):686–94. DOI: 10.1038/nrc4018. PMID: 26493648.</mixed-citation></citation-alternatives></ref><ref id="B39"><label>39.</label><citation-alternatives><mixed-citation xml:lang="en">39. Wouters J., Kalender Atak Z., Aerts S. Decoding transcriptional states in cancer. Curr Opin Genet Dev 2017;(43):82–92. DOI: 10.1016/j.gde.2017.01.003. PMID: 28129557.</mixed-citation><mixed-citation xml:lang="ru">Wouters J., Kalender Atak Z., Aerts S. Decoding transcriptional states in cancer. Curr Opin Genet Dev 2017;(43):82–92. DOI: 10.1016/j.gde.2017.01.003. PMID: 28129557.</mixed-citation></citation-alternatives></ref><ref id="B40"><label>40.</label><citation-alternatives><mixed-citation xml:lang="en">40. Subramanian A., Tamayo P., Mootha V.K. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005;102(43):15545–50. DOI: 10.1073/pnas.0506580102. PMID: 16199517.</mixed-citation><mixed-citation xml:lang="ru">Subramanian A., Tamayo P., Mootha V.K. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005;102(43):15545–50. DOI: 10.1073/pnas.0506580102. PMID: 16199517.</mixed-citation></citation-alternatives></ref><ref id="B41"><label>41.</label><citation-alternatives><mixed-citation xml:lang="en">41. Creixell P., Reimand J., Haider S. et al. Pathway and network analysis of cancer genomes. Nat Methods 2015;12(7):615–21. DOI: 10.1038/nmeth.3440. PMID: 26125594.</mixed-citation><mixed-citation xml:lang="ru">Creixell P., Reimand J., Haider S. et al. Pathway and network analysis of cancer genomes. Nat Methods 2015;12(7):615–21. DOI: 10.1038/nmeth.3440. PMID: 26125594.</mixed-citation></citation-alternatives></ref><ref id="B42"><label>42.</label><citation-alternatives><mixed-citation xml:lang="en">42. Barillot E., Calzone L., Hupe P. et al. Computational systems biology of cancer. U. S.: CRC Press, 2013.</mixed-citation><mixed-citation xml:lang="ru">Barillot E., Calzone L., Hupe P. et al. Computational systems biology of cancer. U. S.: CRC Press, 2013.</mixed-citation></citation-alternatives></ref><ref id="B43"><label>43.</label><citation-alternatives><mixed-citation xml:lang="en">43. Saito R., Smoot M.E., Ono K. et al. A travel guide to Cytoscape plugins. Nat Methods 2012;9(11):1069–76. DOI: 10.1038/nmeth.2212. PMID: 23132118.</mixed-citation><mixed-citation xml:lang="ru">Saito R., Smoot M.E., Ono K. et al. A travel guide to Cytoscape plugins. Nat Methods 2012;9(11):1069–76. DOI: 10.1038/nmeth.2212. PMID: 23132118.</mixed-citation></citation-alternatives></ref><ref id="B44"><label>44.</label><citation-alternatives><mixed-citation xml:lang="en">44. http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/650/Gene_set_enrichment_analysis. html.</mixed-citation><mixed-citation xml:lang="ru">http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/650/Gene_set_enrichment_analysis. html.</mixed-citation></citation-alternatives></ref><ref id="B45"><label>45.</label><citation-alternatives><mixed-citation xml:lang="en">45. Yuryev A. Gene expression profiling for targeted cancer treatment. Expert Opin Drug Discov 2015;10(1):91–9. DOI: 10.1517/17460441.2015.971007. PMID: 25306865.</mixed-citation><mixed-citation xml:lang="ru">Yuryev A. Gene expression profiling for targeted cancer treatment. Expert Opin Drug Discov 2015;10(1):91–9. DOI: 10.1517/17460441.2015.971007. PMID: 25306865.</mixed-citation></citation-alternatives></ref><ref id="B46"><label>46.</label><citation-alternatives><mixed-citation xml:lang="en">46. Pan Q., Long X., Song L. Transcriptome sequencing identified hub genes for hepatocellular carcinoma by weightedgene co-expression analysis. Oncotarget 2016;7(25):38487–99. DOI: 10.18632/oncotarget.9555. PMID: 27220887.</mixed-citation><mixed-citation xml:lang="ru">Pan Q., Long X., Song L. Transcriptome sequencing identified hub genes for hepatocellular carcinoma by weightedgene co-expression analysis. Oncotarget 2016;7(25):38487–99. DOI: 10.18632/oncotarget.9555. PMID: 27220887.</mixed-citation></citation-alternatives></ref><ref id="B47"><label>47.</label><citation-alternatives><mixed-citation xml:lang="en">47. Pyatnitskiy M., Mazo I., Shkrob M. et al. Clustering gene expression regulators: new approach to disease subtyping. PLoS One 2014;9(1):e84955. DOI: 10.1371/journal.pone.0084955. PMID: 24416320.</mixed-citation><mixed-citation xml:lang="ru">Pyatnitskiy M., Mazo I., Shkrob M. et al. Clustering gene expression regulators: new approach to disease subtyping. PLoS One 2014;9(1):e84955. DOI: 10.1371/journal.pone.0084955. PMID: 24416320.</mixed-citation></citation-alternatives></ref><ref id="B48"><label>48.</label><citation-alternatives><mixed-citation xml:lang="en">48. Castillos L., Yuryev A. Developing pathway collection for personalized anticancer therapy. Int J Cancer Clin Res 2016;3:043. DOI: 10.23937/2378-3419/3/1/1043.</mixed-citation><mixed-citation xml:lang="ru">Castillos L., Yuryev A. Developing pathway collection for personalized anticancer therapy. Int J Cancer Clin Res 2016;3:043. DOI: 10.23937/2378-3419/3/1/1043.</mixed-citation></citation-alternatives></ref><ref id="B49"><label>49.</label><citation-alternatives><mixed-citation xml:lang="en">49. Llovet J.M., Ricci S., Mazzaferro V. et al. Sorafenib in advanced hepatocellular carcinoma. N Engl J Med 2008;359(4):378–90. DOI: 10.1056/NEJMoa0708857. PMID: 18650514.</mixed-citation><mixed-citation xml:lang="ru">Llovet J.M., Ricci S., Mazzaferro V. et al. Sorafenib in advanced hepatocellular carcinoma. N Engl J Med 2008;359(4):378–90. DOI: 10.1056/NEJMoa0708857. PMID: 18650514.</mixed-citation></citation-alternatives></ref><ref id="B50"><label>50.</label><citation-alternatives><mixed-citation xml:lang="en">50. Llovet J.M., Villanueva A., Lachenmayer A. et al. Advances in targeted therapies for hepatocellular carcinoma in the genomic era. Nat Rev Clin Oncol 2015;12:408–44. DOI: 10.1038/nrclinonc.2015.103. PMID: 26054909.</mixed-citation><mixed-citation xml:lang="ru">Llovet J.M., Villanueva A., Lachenmayer A. et al. Advances in targeted therapies for hepatocellular carcinoma in the genomic era. Nat Rev Clin Oncol 2015;12:408–44. DOI: 10.1038/nrclinonc.2015.103. PMID: 26054909.</mixed-citation></citation-alternatives></ref><ref id="B51"><label>51.</label><citation-alternatives><mixed-citation xml:lang="en">51. Макарова А.С., Лазаревич Н.Л. Нарушение функций внутриклеточных сигнальных путей и их возможное влияние на чувствительность гепатоцеллюлярных карцином к сорафенибу. Клиническая лабораторная диагностика 2013;(10):34–7, 66–8. [Makarova A.S., Lazarevich N.L. Deregulation of signaling pathways involved in sorafenib resistance of hepatocellular carcinoma. Klinicheskaya laboratornaya diagnostika =Clinical Laboratory Ddiagnostics 2013;(10):34–7, 66–8. (In Russ.)].</mixed-citation><mixed-citation xml:lang="ru">Макарова А.С., Лазаревич Н.Л. Нарушение функций внутриклеточных сигнальных путей и их возможное влияние на чувствительность гепатоцеллюлярных карцином к сорафенибу. Клиническая лабораторная диагностика 2013;(10):34–7, 66–8. [Makarova A.S., Lazarevich N.L. Deregulation of signaling pathways involved in sorafenib resistance of hepatocellular carcinoma. Klinicheskaya laboratornaya diagnostika =Clinical Laboratory Ddiagnostics 2013;(10):34–7, 66–8. (In Russ.)].</mixed-citation></citation-alternatives></ref><ref id="B52"><label>52.</label><citation-alternatives><mixed-citation xml:lang="en">52. https://www.fda.gov/Drugs/InformationOnDrugs/ApprovedDrugs/ucm555548. htm.</mixed-citation><mixed-citation xml:lang="ru">https://www.fda.gov/Drugs/InformationOnDrugs/ApprovedDrugs/ucm555548. htm.</mixed-citation></citation-alternatives></ref><ref id="B53"><label>53.</label><citation-alternatives><mixed-citation xml:lang="en">53. http://www.selleckchem.com/products/Sorafenib-Tosylate. html.</mixed-citation><mixed-citation xml:lang="ru">http://www.selleckchem.com/products/Sorafenib-Tosylate. html.</mixed-citation></citation-alternatives></ref><ref id="B54"><label>54.</label><citation-alternatives><mixed-citation xml:lang="en">54. http://www.selleckchem.com/products/BAY-73–4506. html.</mixed-citation><mixed-citation xml:lang="ru">http://www.selleckchem.com/products/BAY-73–4506. html.</mixed-citation></citation-alternatives></ref><ref id="B55"><label>55.</label><citation-alternatives><mixed-citation xml:lang="en">55. Kudo M. A new era of systemic therapy for hepatocellular carcinoma with regorafenib and lenvatinib. Liver Cancer 2017;6(3):177–84. DOI: 10.1159/000462153. PMID: 28626729.</mixed-citation><mixed-citation xml:lang="ru">Kudo M. A new era of systemic therapy for hepatocellular carcinoma with regorafenib and lenvatinib. Liver Cancer 2017;6(3):177–84. DOI: 10.1159/000462153. PMID: 28626729.</mixed-citation></citation-alternatives></ref><ref id="B56"><label>56.</label><citation-alternatives><mixed-citation xml:lang="en">56. Kudo M. Immune checkpoint inhibition in hepatocellular carcinoma: basics and ongoing clinical trials. Oncology 2017;92(Suppl 1):50–62. DOI: 10.1159/000451016. PMID: 28147363.</mixed-citation><mixed-citation xml:lang="ru">Kudo M. Immune checkpoint inhibition in hepatocellular carcinoma: basics and ongoing clinical trials. Oncology 2017;92(Suppl 1):50–62. DOI: 10.1159/000451016. PMID: 28147363.</mixed-citation></citation-alternatives></ref><ref id="B57"><label>57.</label><citation-alternatives><mixed-citation xml:lang="en">57. https://www.fda.gov/Drugs/InformationOnDrugs/ApprovedDrugs/ucm577166. htm.</mixed-citation><mixed-citation xml:lang="ru">https://www.fda.gov/Drugs/InformationOnDrugs/ApprovedDrugs/ucm577166. htm.</mixed-citation></citation-alternatives></ref></ref-list></back></article>
