<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE root>
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="other" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Advances in Molecular Oncology</journal-id><journal-title-group><journal-title xml:lang="en">Advances in Molecular Oncology</journal-title><trans-title-group xml:lang="ru"><trans-title>Успехи молекулярной онкологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2313-805X</issn><issn publication-format="electronic">2413-3787</issn><publisher><publisher-name xml:lang="en">Publishing House ABV Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">610</article-id><article-id pub-id-type="doi">10.17650/2313-805X-2023-10-4-61-75</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>REVIEW</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ОБЗОРНАЯ СТАТЬЯ</subject></subj-group><subj-group subj-group-type="article-type"><subject></subject></subj-group></article-categories><title-group><article-title xml:lang="en">Molecular features of gastrointestinal stromal tumors “wild-type” (<italic>KIT/PDGFRA</italic> WT)</article-title><trans-title-group xml:lang="ru"><trans-title>Молекулярные особенности гастроинтестинальных стромальных опухолей «дикого типа» (<italic>KIT/PDGFRA</italic> WT)</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-4767-6983</contrib-id><name-alternatives><name xml:lang="en"><surname>Mazurenko</surname><given-names>N. N.</given-names></name><name xml:lang="ru"><surname>Мазуренко</surname><given-names>Н. Н.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Natalia N. Mazurenko.</p><p>24 Kashirskoye Shosse, Moscow 115522</p></bio><bio xml:lang="ru"><p>Мазуренко Наталья Николаевна.</p><p>115522 Москва, Каширское шоссе, 24</p></bio><email>nnmazurenko@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6169-2723</contrib-id><name-alternatives><name xml:lang="en"><surname>Yugay</surname><given-names>V. V.</given-names></name><name xml:lang="ru"><surname>Югай</surname><given-names>В. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>24 Kashirskoye Shosse, Moscow 115522</p></bio><bio xml:lang="ru"><p>115522 Москва, Каширское шоссе, 24</p></bio><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3388-7547</contrib-id><name-alternatives><name xml:lang="en"><surname>Tsyganova</surname><given-names>I. V.</given-names></name><name xml:lang="ru"><surname>Цыганова</surname><given-names>И. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>24 Kashirskoye Shosse, Moscow 115522</p></bio><bio xml:lang="ru"><p>115522 Москва, Каширское шоссе, 24</p></bio><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">N.N. Blokhin National Medical Russian Research Center of Oncology, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">ФГБУ «Национальный медицинский исследовательский центр онкологии им. Н.Н. Блохина» Минздрава России</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2023-12-15" publication-format="electronic"><day>15</day><month>12</month><year>2023</year></pub-date><volume>10</volume><issue>4</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>61</fpage><lpage>75</lpage><history><date date-type="received" iso-8601-date="2023-09-26"><day>26</day><month>09</month><year>2023</year></date><date date-type="accepted" iso-8601-date="2023-12-15"><day>15</day><month>12</month><year>2023</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2023, Mazurenko N.N., Yugay V.V., Tsyganova I.V.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2023, Мазуренко Н.Н., Югай В.В., Цыганова И.В.</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="en">Mazurenko N.N., Yugay V.V., Tsyganova I.V.</copyright-holder><copyright-holder xml:lang="ru">Мазуренко Н.Н., Югай В.В., Цыганова И.В.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://umo.abvpress.ru/jour/article/view/610">https://umo.abvpress.ru/jour/article/view/610</self-uri><abstract xml:lang="en"><p>Gastrointestinal stromal tumors (GIST) are the most common mesenchymal tumors of the gastrointestinal tract. Their main features are the expression of CD117 (KIT) and mutations of <italic>KIT </italic>or <italic>PDGFRA i</italic>n 85 % of patients. however, 10–15 % of adult GIST and 85 % of pediatric GIST do not have <italic>KIT/PDGFRA</italic> mutations (<italic>KIT/PDGFRA</italic> WT GIST or “wild-type” GIST). The prognosis and clinical course of these tumors and GIST with <italic>KIT/PDGFRA</italic> mutations differ. “Wild-type” GIST are quite heterogeneous group of tumors in terms of clinical phenotype, genetic etiology, and molecular pathways. Gastrointestinal stromal tumors are divided into SDH-deficient and SDH-competent based on the succinate dehydrogenase (SDH) complex. SDH-deficient GIST occur predominantly in children and young patients  with Carney–Stratakis syndrome and Carney triad; there are also sporadic tumors. More than half of SDH-deficient GIST contain mutations in <italic>SDHA</italic>, <italic>SDHB</italic>, <italic>SDHD</italic> or <italic>SDHC</italic>, while the rest are caused by hypermethylation of the <italic>SDHC </italic>promoter. SDH-competent “wild-type” GIST include tumors with <italic>BRAF</italic>, <italic>RAS</italic>, or <italic>NF1</italic> mutations that activate the RAS-RAF-MAPK pathway and <italic>KIT/PDGFRA/SDH/RAS-P</italic> WT GIST subtype or “quadruple wild type” GIST. The genomic profiles of these tumors and GIST with <italic>KIT/PDGFRA</italic> mutation or SDH deficiency differ significantly. One of the features of “quadruple wild type” GIST is activation of the FGFR (fibroblast growth factor receptors) signaling pathway due to chimeric FGFR, FGFR mutations, or overexpression of FGF (fibroblast growth factor). Another feature is chimeric genes containing fragments of <italic>NTRK, BRAF, FGFR</italic> and other genes that behave as oncogene drivers. In “quadruple wild-type” GIST the somatic mutations in <italic>TP53, MAX, MEN1, CTNND2, CHD4, ARIDIA</italic> and other genes were revealed as well as in the cell cycle genes <italic>RB1, CDK4, CDKN1B</italic>. There is no specific treatment for patients with “wild-type” GIST; the choice of drug is determined by the genetic disorder. There is a need to improve our understanding of the molecular mechanisms underlying the different GIST subtypes to develop more effective therapeutic approaches.</p></abstract><trans-abstract xml:lang="ru"><p>Гастроинтестинальные стромальные опухоли (ГИСО) – наиболее распространенные мезенхимальные опухоли желудочно-кишечного тракта. Их основными признаками являются экспрессия cD117 (KIT) и мутации в генах <italic>KIT</italic> или <italic>PDGFRA</italic> у 85 % пациентов. Однако 10–15 % ГИСО взрослых и 85 % ГИСО детей не имеют мутаций <italic>KIT/PDGFRA</italic> (<italic>ГИСО KIT/PDGFRA</italic> WT, или <italic>ГИСО</italic> «дикого типа»). Прогноз и клиническое течение этих опухолей и ГИСО с мутациями <italic>KIT/PDGFRA</italic> различаются. Гастроинтестинальные стромальные опухоли «дикого типа» довольно гетерогенная группа опухолей по клиническому фенотипу, генетической этиологии и по молекулярным путям. Гастроинтестинальные стромальные опухоли разделяют на SDH-дефицитные и SDH-компетентные по комплексу сукцинатдегидрогеназы (SDH). SDH-дефицитные ГИСО встречаются преимущественно у детей и молодых пациентов с синдромом Карни–Стратакиса и триадой Карни, есть и спорадические опухоли. Более 50 % SDH-дефицитных ГИСО содержат мутации в генах <italic>SDHA</italic>, <italic>SDHB</italic>, <italic>SDHD</italic>, <italic>SDHC</italic>, а остальные вызваны гиперметилированием промотора <italic>SDHC</italic>. SDH-компетентные ГИСО «дикого типа» включают опухоли с мутациями  <italic>BRAF</italic>, <italic>RAS </italic>или <italic>NF1</italic>, которые активируют RAS-RAF-MAPK-путь и подтип ГИСО <italic>KIT/PDGFRA/SDH/RAS-P </italic>WT, или ГИСО «четырежды дикого типа». Профили генома этих опухолей и ГИСО с мутацией <italic>KIT/PDGFRA</italic> или дефицитом SDH значительно различаются. Одной из особенностей ГИСО «четырежды дикого типа» является активация  FGFR-сигнального пути (FGFR – рецепторы фактора роста фибробластов) из-за химерных генов <italic>FGFR</italic>, мутаций <italic>FGFR</italic> или гиперэкспрессии фактора роста фибробластов (FGF). Еще одной особенностью являются химерные гены, содержащие фрагменты генов <italic>NTRK</italic>, <italic>BRAF</italic>,  <italic>FGFR</italic> и других, которые ведут себя как онкогены-драйверы. В ГИСО «четырежды дикого типа» выявлены соматические мутации генов <italic>TP53, MAX, MEN1, CTNND2, CHD4, ARIDIA</italic>  и других, а также генов клеточного цикла <italic>RB1, CDK4, CDKN1B</italic>. Специфического лечения для пациентов с ГИСО «дикого типа» не существует, выбор препарата обусловлен генетическим нарушением. Необходимо совершенствовать понимание молекулярных механизмов, лежащих в основе различных подтипов ГИСО, для разработки более эффективных терапевтических подходов.</p></trans-abstract><kwd-group xml:lang="en"><kwd><italic>KIT/PDGFRA</italic> gastrointestinal stromal tumors “wild-type”</kwd><kwd>SDH-deficient gastrointestinal stromal tumors</kwd><kwd><italic>BRAF</italic>, <italic>RAS</italic>, <italic>NF1</italic> mutations</kwd><kwd>signaling pathway of fibroblast growth factor receptors</kwd><kwd>chimeric genes</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>гастроинтестинальные стромальные опухоли <italic>KIT / PDGFRA</italic> «дикого типа»</kwd><kwd>SDH-дефицитные гастроинтестинальные стромальные опухоли</kwd><kwd>мутации <italic>BRAF</italic>, <italic>RAS</italic>, <italic>NF1</italic></kwd><kwd>сигнальный путь рецепторов фактора роста фибробластов</kwd><kwd>химерные гены</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Miettinen M., Lasota J. Gastrointestinal stromal tumors. Gastroenterol Clin North Am 2013;42(2):399–415. DOI: 10.1016/j.gtc.2013.01.001</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Joensuu H., Hohenberger P., Corless C.L. Gastrointestinal stromal tumor. Lancet 2013;382(9896):973–83. DOI: 10.1016/S0140-6736(13)60106-3</mixed-citation></ref><ref id="B3"><label>3.</label><citation-alternatives><mixed-citation xml:lang="en">Mazurenko N.N., Tsyganova I.V. Genetic features and markers of gastrointestinal stromal tumors. In: Molecular carcinogenesis. Moscow, ABV-press, 2016. Pp. 300–321. (In Russ.).</mixed-citation><mixed-citation xml:lang="ru">Мазуренко Н.Н., Цыганова И.В. Генетические особенности и маркеры гастроинтестинальных стромальных опухолей. В кн.: Молекулярный канцерогенез. М.: АБВ-пресс, 2016. C. 300–321.</mixed-citation></citation-alternatives></ref><ref id="B4"><label>4.</label><citation-alternatives><mixed-citation xml:lang="en">Mazurenko N.N., Yugay V.V., Tsyganova I.V. Molecular heterogeneity and analysis of the long-term survival of patients with gastrointestinal stromal tumors. Uspekhi molekulyarnoy onkologii = Advances in Molecular Oncology 2022;9(2):43–57. DOI: 10.17650/2313-805X-2022-9-2-43-57</mixed-citation><mixed-citation xml:lang="ru">Мазуренко Н.Н., Югай В.В., Цыганова И.В. и др. Молекулярная гетерогенность и анализ отдаленной выживаемости пациентов с гастроинтестинальными стромальными опухолями. Успехи молекулярной онкологии 2022;9(2):43–57. DOI: 0.17650/2313-805X-2022-9-2-43-57</mixed-citation></citation-alternatives></ref><ref id="B5"><label>5.</label><mixed-citation>Blay J.Y., Kang Y.K., Nishida T., von Mehren M. Gastrointestinal stromal tumors. Nat Rev Dis Primers 2021;7(1):22. DOI: 10.1038/s41572-021-00254-5</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Søreide K., Sandvik O.M., Søreide J.A. et al. Global epidemiology of gastrointestinal stromal tumors (GIST): a systematic review of population-based cohort studies. Cancer Epidemiol 2016;40:39–46. DOI: 10.1016/j.canep.2015.10.031</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Hirota S., Isozaki K., Moriyama Y. et al. Gain-of-function mutations of c-kit in human gastrointestinal stromal tumors. Science 1998;279(5350):577–80. DOI: 10.1126/science.279.5350.577</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Hirota S., Ohashi A., Nishida T. et al. Gain-of-function mutations of platelet-derived growth factor receptor alpha gene in gastrointestinal stromal tumors.Gastroenterology 2003;125(3):660–7. DOI: 10.1016/s0016-5085(03)01046-1.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Heinrich M.C., Corless C.L., Duensing A. et al. PDGFRA activating mutations in gastrointestinal stromal tumors. Science 2003;299(5607):708–10. DOI: 10.1126/science.1079666</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Joensuu H., Roberts P.J., Sarlomo-Rikala M. et al. Effect of the tyrosine kinase inhibitor STI571 in a patient with a metastatic gastrointestinal stromal tumor. N Engl J Med 2001;344(14):1052–6. DOI: 10.1056/NEJM200104053441404</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Ding H., Yu X., Yu Y. et al. Clinical significance of the molecular heterogeneity of gastrointestinal stromal tumors and related research: a systematic review. Oncol Rep 2020;43(3):751–64. DOI: 10.3892/or.2020.7470</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Huang W.K., Wu C.E., Wang S.Y. et al. Systemic therapy for gastrointestinal stromal tumor: current standards and emerging challenges. Curr Treat Options Oncol 2022;23(9):1303–19. DOI: 10.1007/s11864-022-00996-8</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Nannini M., Biasco G., Astolfi A., Pantaleo M.A. An overview on molecular biology of KIT/PDGFRA wild type (WT) gastrointestinal stromal tumors (GIST). J Med Genet 2013;50(10):653–61. DOI: 10.1136/jmedgenet-2013-101695</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Boikos S.A., Stratakis C.A. The genetic landscape of gastrointestinal stromal tumor lacking KIT and PDGFRA mutations. Endocrine 2014;47(2):401–8. DOI: 10.1007/s12020-014-0346-3</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Wada R., Arai H., Kure S. et al. “Wild type” GIST: clinicopathological features and clinical practice. Pathol Int 2016;66(8):431–7. DOI: 10.1111/pin.12431</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Boikos S.A., Pappo A.S., Killian J.K. et al. Molecular subtypes of KIT/PDGFRA wild-type gastrointestinal stromal tumors: a report from the National Institutes of Health Gastrointestinal Stromal Tumor Clinic. JAMA Oncol 2016;2(7):922–8. DOI: 10.1001/jamaoncol.2016.0256</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Andrzejewska M., Czarny J., Derwich K. Latest advances in the management of pediatric gastrointestinal stromal tumors. Cancers (Basel) 2022;14(20):4989. DOI: 10.3390/cancers14204989</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Wu C.E., Tzen C.Y., Wang S.Y., Yeh C.N. Clinical diagnosis of gastrointestinal stromal tumor (GIST): from the molecular genetic point of view. Cancers (Basel) 2019;11(5):679. DOI: 10.3390/cancers11050679</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Rutter J., Winge D.R., Schiffman J.D. Succinate dehydrogenase – assembly, regulation and role in human disease. Mitochondrion 2010;10(4):393–401. DOI: 10.1016/j.mito.2010.03.001</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Niinuma T., Suzuki H., Sugai T. Molecular characterization and pathogenesis of gastrointestinal stromal tumor. Transl Gastroenterol Hepatol 2018;3:2. DOI: 10.21037/tgh.2018.01.02</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Janeway K.A., Kim S.Y., Lodish M. et al. Defects in succinate dehydrogenase in gastrointestinal stromal tumors lacking KIT and PDGFRA mutations. Proc Natl Acad Sci USA 2011;108(1):314–8. DOI: 10.1073/pnas.1009199108.</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Boikos S.A., Xekouki P., Fumagalli E. et al. Carney triad can be (rarely) associated with germline succinate dehydrogenase defects. Eur J Hum Genet 2016;24(4):569–73. DOI: 10.1038/ejhg.2015.142</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Chou A., Chen J., Clarkson A. et al. Succinate dehydrogenase-deficient GISTs are characterized by IGF1R overexpression. Mod Pathol 2012;25(9):1307–13. DOI: 10.1038/modpathol.2012.77</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Mason E.F., Hornick J.L. Succinate dehydrogenase deficiency is associated with decreased 5-hydroxymethyl cytosine production in gastrointestinal stromal tumors: implications for mechanisms of tumorigenesis. Mod Pathol 2013;26(11):1492–7. DOI: 10.1038/modpathol.2013.86</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Schipani A., Nannini M., Astolfi A., Pantaleo M.A. SDHA germline mutations in SDH-deficient GISTs: a current update. Genes (Basel) 2023;14(3):646. DOI: 10.3390/genes14030646</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Carney J.A. Gastric stromal sarcoma, pulmonary chondroma, and extra-adrenal paraganglioma (Carney Triad): natural history, adrenocortical component, and possible familial occurrence. Mayo Clin Proc 1999;74(6):543–52. DOI: 10.4065/74.6.543</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Zhang L., Smyrk T.C., Young W.F.Jr. et al. Gastric stromal tumors in Carney triad are different clinically, pathologically, and behaviorally from sporadic gastric gastrointestinal stromal tumors: findings in 104 cases. Am J Surg Pathol 2010;34(1):53–64. DOI: 10.1097/PAS.0b013e3181c20f4f</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Carney J.A., Stratakis C.A. Familial paraganglioma and gastric stromal sarcoma: a new syndrome distinct from the Carney triad. Am J Med Genet 2002;108(2):132–9. DOI: 10.1002/ajmg.10235</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Pasini B., McWhinney S.R., Bei T. et al. Clinical and molecular genetics of patients with the Carney–Stratakis syndrome and germline mutations of the genes coding for the succinate dehydrogenase subunits SDHB, SDHC, and SDHD. Eur J Hum Genet 2008;16(1):79–88. DOI: 10.1038/sj.ejhg.5201904</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Gaal J., Stratakis C.A., Carney J.A. et al. SDHB immunohistochemistry: a useful tool in the diagnosis of Carney– Stratakis and Carney triad gastrointestinal stromal tumors. Mod Pathol 2011;24(1):147–51. DOI: 10.1038/modpathol.2010.185</mixed-citation></ref><ref id="B31"><label>31.</label><citation-alternatives><mixed-citation xml:lang="en">Yugai V.V., Nikulin M.P., Kozlov N.A. et al. Clinical and morphological characteristics of patients of gastrointestinal stromal tumor with deficiency of succinate dehydrogenase. Voprosy onkologii = Problems in Oncology 2022;68(5):614–21. DOI: 10.37469/0507-3758-2022-68-5-614-621</mixed-citation><mixed-citation xml:lang="ru">Югай В.В., Никулин М.П., Козлов Н.А. и др. Клинико-морфологические характеристики пациентов с гастроинтестинальной стромальной опухолью с дефицитом сукцинатдегидрогеназы. Вопросы онкологии 2022;68(5):614–21. DOI: 10.37469/0507-3758-2022-68-5-614-621</mixed-citation></citation-alternatives></ref><ref id="B32"><label>32.</label><mixed-citation>Dwight T., Benn D.E., Clarkson A. et al. Loss of SDHA expression identifies SDHA mutations in succinate dehydrogenase-deficient gastrointestinal stromal tumors. Am J Surg Pathol 2013;37(2):226–33. DOI: 10.1097/PAS.0b013e3182671155</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Miettinen M., Killian J.K., Wang Z.F. et al. Immunohistochemical loss of succinate dehydrogenase subunit A (SDHA) in gastrointestinal stromal tumors (GISTs) signals SDHA germline mutation. Am J Surg Pathol 2013;37(2):234–40. DOI: 10.1097/PAS.0b013e3182671178</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Pantaleo M.A., Lolli C., Nannini M. et al. Good survival outcome of metastatic SDH-deficient gastrointestinal stromal tumors harboring SDHA mutations. Genet Med 2015;17(5):391–5. DOI: 10.1038/gim.2014.115</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>von Mehren M., George S., Heinrich M.C. et al. Linsitinib (OSI-906) for the treatment of adult and pediatric wild-type gastrointestinal stromal tumors, a SARC phase II study. Clin Cancer Res 2020;26(8):1837–45. DOI: 10.1158/1078-0432.CCR-19-1069</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Haller F., Moskalev E.A., Faucz F.R. et al. Aberrant DNA hypermethylation of SDHC: a novel mechanism of tumor development in Carney triad. Endocr Relat Cancer 2014;21(4): 567–77. DOI: 10.1530/ERC-14-0254</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Killian J.K., Miettinen M., Walker R.L. et al. Recurrent epimutation of SDHC in gastrointestinal stromal tumors. Sci Transl Med 2014;6(268):268ra177. DOI: 10.1126/scitranslmed.3009961</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Agaram N.P., Wong G.C., Guo T. et al. Novel V600E BRAF mutations in imatinib-naive and imatinib-resistant gastrointestinal stromal tumors. Genes Chromosomes Cancer 2008;47(10):853–9. DOI: 10.1002/gcc.20589</mixed-citation></ref><ref id="B39"><label>39.</label><mixed-citation>Agaimy A., Terracciano L.M., Dirnhofer S. et al. V600E BRAF mutations are alternative early molecular events in a subset of KIT/ PDGFRA wild-type gastrointestinal stromal tumors. J Clin Pathol 2009;62(7):613–6. DOI: 10.1136/jcp.2009.064550</mixed-citation></ref><ref id="B40"><label>40.</label><mixed-citation>Huss S., Pasternack H., Ihle M.A. et al. Clinicopathological and molecular features of a large cohort of gastrointestinal stromal tumors (GISTs) and review of the literature: BRAF mutations in KIT/PDGFRA wild-type GISTs are rare events. Hum Pathol 2017;62:206–14. DOI: 10.1016/j.humpath.2017.01.005</mixed-citation></ref><ref id="B41"><label>41.</label><mixed-citation>Miranda C., Nucifora M., Molinari F. et al. KRAS and BRAF mutations predict primary resistance to imatinib in gastrointestinal stromal tumors. Clin Cancer Res 2012;18(6):1769–76. DOI: 10.1158/1078-0432.CCR-11-2230</mixed-citation></ref><ref id="B42"><label>42.</label><mixed-citation>Franck C., Rosania R., Franke S. et al. The BRAF status may predict response to sorafenib in gastrointestinal stromal tumors resistant to imatinib, sunitinib, and regorafenib: case series and review of the literature. Digestion 2019;99(2):179–84. DOI: 10.1159/000490886</mixed-citation></ref><ref id="B43"><label>43.</label><mixed-citation>Falchook G.S., Trent J.C., Heinrich M.C. et al. BRAF mutant gastrointestinal stromal tumor: first report of regression with BRAF inhibitor dabrafenib (GSK2118436) and whole exomic sequencing for analysis of acquired resistance. Oncotarget 2013;4(2):310–5. DOI: 10.18632/oncotarget.864</mixed-citation></ref><ref id="B44"><label>44.</label><mixed-citation>Crona D.J., Keisler M.D., Walko C.M. Regorafenib: a novel multitargeted tyrosine kinase inhibitor for colorectal cancer and gastrointestinal stromal tumors. Ann Pharmacother 2013;47(12):1685–96. DOI: 10.1177/1060028013509792</mixed-citation></ref><ref id="B45"><label>45.</label><mixed-citation>Rossi S., Sbaraglia M., Dell’Orto M.C. et al. Concomitant KIT/BRAF and PDGFRA/BRAF mutations are rare events in gastrointestinal stromal tumors. Oncotarget 2016;7(21):30109–18. DOI: 10.18632/oncotarget.8768</mixed-citation></ref><ref id="B46"><label>46.</label><mixed-citation>Guo J., Ge Q., Yang F. et al. Small gastric stromal tumors: an underestimated risk. Cancers (Basel) 2022;14(23):6008. DOI: 10.3390/cancers14236008</mixed-citation></ref><ref id="B47"><label>47.</label><mixed-citation>Lasota J., Xi L., Coates T. et al. No KRAS mutations found in gastrointestinal stromal tumors (GISTs): molecular genetic study of 514 cases. Mod Pathol 2013;26(11):1488–91. DOI: 10.1038/modpathol.2013.89</mixed-citation></ref><ref id="B48"><label>48.</label><mixed-citation>Antonescu C.R., Romeo S., Zhang L et al. Dedifferentiation in gastrointestinal stromal tumor to an anaplastic KIT-negative phenotype: a diagnostic pitfall: morphologic and molecular characterization of 8 cases occurring either de novo or after imatinib therapy. Am J Surg Pathol 2013;37(3):385–92. DOI: 10.1097/PAS.0b013e31826c1761</mixed-citation></ref><ref id="B49"><label>49.</label><mixed-citation>Serrano C., Wang Y., Mariño-Enríquez A. et al. KRAS and KIT gatekeeper mutations confer polyclonal primary imatinib resistance in GI stromal tumors: relevance of concomitant phosphatidylinositol 3-kinase/AKT dysregulation. J Clin Oncol 2015;33(22):e93–6. DOI: 10.1200/JCO.2013.48.7488</mixed-citation></ref><ref id="B50"><label>50.</label><mixed-citation>Hechtman J.F., Zehir A., Mitchell T. et al. Novel oncogene and tumor suppressor mutations in KIT and PDGFRA wild type gastrointestinal stromal tumors revealed by next generation sequencing. Genes Chromosomes Cancer 2015;54(3):177–84. DOI: 10.1002/gcc.22230</mixed-citation></ref><ref id="B51"><label>51.</label><mixed-citation>Chen Q., Li R., Zhang Z.G. et al. Oncogene mutational analysis in Chinese gastrointestinal stromal tumor patients. Onco Targets Ther 2018;11:2279–86. DOI: 10.2147/OTT.S155214</mixed-citation></ref><ref id="B52"><label>52.</label><mixed-citation>Miettinen M., Fetsch J.F., Sobin L.H., Lasota J. Gastrointestinal stromal tumors in patients with neurofibromatosis 1: a clinicopathologic and molecular genetic study of 45 cases. Am J Surg Pathol 2006;30(1):90–6. DOI: 10.1097/01.pas.0000176433.81079.bd</mixed-citation></ref><ref id="B53"><label>53.</label><mixed-citation>Mussi C., Schildhaus H.U., Gronchi A. et al. Therapeutic consequences from molecular biology for gastrointestinal stromal tumor patients affected by neurofibromatosis type 1. Clin Cancer Res 2008;14(14):4550–5. DOI: 10.1158/1078-0432.CCR-08-0086</mixed-citation></ref><ref id="B54"><label>54.</label><mixed-citation>Gutmann D.H., Ferner R.E., Listernick R.H. et al. Neurofibromatosis type 1. Nat Rev Dis Primers 2017;3:17004. DOI: 10.1038/nrdp.2017.4. PMID: 28230061</mixed-citation></ref><ref id="B55"><label>55.</label><mixed-citation>Gasparotto D., Rossi S., Polano M. et al. Quadruple-negative GIST is a sentinel for unrecognized neurofibromatosis type 1 syndrome. Clin Cancer Res 2017;23(1):273–82. DOI: 10.1158/1078-0432.CCR-16-0152</mixed-citation></ref><ref id="B56"><label>56.</label><mixed-citation>Belinsky M.G., Rink L., Cai K.Q. et al. Somatic loss of function mutations in neurofibromin 1 and MYC associated factor X genes identified by exome-wide sequencing in a wild-type GIST case. BMC Cancer 2015;15:887. DOI: 10.1186/s12885-015-1872-y</mixed-citation></ref><ref id="B57"><label>57.</label><mixed-citation>Wu J., Zhou H., Yi X. et al. Targeted Deep sequencing reveals unrecognized KIT mutation coexistent with NF1 deficiency in GISTs. Cancer Manag Res 2021;13:297–306. DOI: 10.2147/CMAR.S280174</mixed-citation></ref><ref id="B58"><label>58.</label><mixed-citation>Shi S.S., Wu N., He Y. et al. EGFR gene mutation in gastrointestinal stromal tumors. Histopathology 2017;71(4):553–61. DOI: 10.1111/his.13251</mixed-citation></ref><ref id="B59"><label>59.</label><mixed-citation>Lasota J., Felisiak-Golabek A., Wasag B. et al. Frequency and clinicopathologic profile of PIK3CA mutant GISTs: molecular genetic study of 529 cases. Mod Pathol 2016;29(3):275–82. DOI: 10.1038/modpathol.2015.160</mixed-citation></ref><ref id="B60"><label>60.</label><mixed-citation>Quattrone A., Wozniak A., Dewaele B. et al. Frequent mono-allelic loss associated with deficient PTEN expression in imatinib-resistant gastrointestinal stromal tumors. Mod Pathol 2014;27(11):1510–20. DOI: 10.1038/modpathol.2014.53</mixed-citation></ref><ref id="B61"><label>61.</label><mixed-citation>Lasota J., Kowalik A., Felisiak-Golabek A. et al. New mechanisms of mTOR pathway activation in KIT-mutant malignant GISTs. Appl Immunohistochem Mol Morphol 2019;27(1):54–8. DOI: 10.1097/PAI.0000000000000541</mixed-citation></ref><ref id="B62"><label>62.</label><mixed-citation>Pantaleo M.A., Nannini M., Corless C.L., Heinrich MC. Quadruple wild-type (WT) GIST: defining the subset of GIST that lacks abnormalities of KIT, PDGFRA, SDH, or RAS signaling pathways. Cancer Med 2015;4(1):101–3. DOI: 10.1002/cam4.325</mixed-citation></ref><ref id="B63"><label>63.</label><mixed-citation>Shi E., Chmielecki J., Tang C.M. et al. FGFR1 and NTRK3 actionable alterations in “Wild-Type” gastrointestinal stromal tumors. J Transl Med 2016;14(1):339. DOI: 10.1186/s12967-016-1075-6</mixed-citation></ref><ref id="B64"><label>64.</label><mixed-citation>Urbini M., Indio V., Tarantino G. et al. Gain of FGF4 is a frequent event in KIT/PDGFRA/SDH/RAS-P WT GIST. Genes Chromosomes Cancer 2019;58(9):636–42. DOI: 10.1002/gcc.22753</mixed-citation></ref><ref id="B65"><label>65.</label><mixed-citation>Astolfi A., Pantaleo M.A., Indio V. et al. The Emerging role of the FGF/FGFR pathway in gastrointestinal stromal tumor. Int J Mol Sci 2020;21(9):3313. DOI: 10.3390/ijms21093313</mixed-citation></ref><ref id="B66"><label>66.</label><mixed-citation>Napolitano A., Ostler A.E., Jones R.L., Huang P.H. Fibroblast growth factor receptor (FGFR) signaling in GIST and soft tissue sarcomas. Cells 2021;10(6):1533. DOI: 10.3390/cells10061533</mixed-citation></ref><ref id="B67"><label>67.</label><mixed-citation>Pantaleo M.A., Urbini M., Indio V. et al. Genome-wide analysis identifies MEN1 and MAX mutations and a neuroendocrine-like molecular heterogeneity in Quadruple WT GIST. Mol Cancer Res 2017;15(5):553–62. DOI: 10.1158/1541-7786.MCR-16-0376</mixed-citation></ref><ref id="B68"><label>68.</label><mixed-citation>Flavahan W.A., Drier Y., Johnstone S.E. et al. Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs. Nature 2019;575(7781):229–33. DOI: 10.1038/s41586-019-1668-3</mixed-citation></ref><ref id="B69"><label>69.</label><mixed-citation>Javidi-Sharifi N., Traer E., Martinez J. et al. Crosstalk between KIT and FGFR3 promotes gastrointestinal stromal tumor cell growth and drug resistance. Cancer Res 2015;75(5):880–91. DOI: 10.1158/0008-5472.CAN-14-0573</mixed-citation></ref><ref id="B70"><label>70.</label><mixed-citation>Li F., Huynh H., Li X. et al. FGFR-mediated reactivation of MAPK signaling attenuates antitumor effects of imatinib in gastrointestinal stromal tumors. Cancer Discov 2015;5(4):438–51. DOI: 10.1158/2159-8290.CD-14-0763</mixed-citation></ref><ref id="B71"><label>71.</label><mixed-citation>Boichuk S., Galembikova A., Dunaev P. et al. A novel receptor tyrosine kinase switch promotes gastrointestinal stromal tumor drug resistance. Molecules 2017;22(12):2152. DOI: 10.3390/molecules22122152</mixed-citation></ref><ref id="B72"><label>72.</label><mixed-citation>Boichuk S., Galembikova A., Mikheeva E. et al. Inhibition of FGF2-mediated signaling in GIST-promising approach for overcoming resistance to imatinib. Cancers (Basel) 2020;12(6):1674. DOI: 10.3390/cancers12061674</mixed-citation></ref><ref id="B73"><label>73.</label><mixed-citation>Brenca M., Rossi S., Polano M. et al. Transcriptome sequencing identifies ETV6-NTRK3 as a gene fusion involved in GIST. J Pathol 2016;238(4):543–9. DOI: 10.1002/path.4677</mixed-citation></ref><ref id="B74"><label>74.</label><mixed-citation>Kheder E.S., Hong D.S. Emerging targeted therapy for tumors with NTRK fusion proteins. Clin Cancer Res 2018;24(23):5807–14. DOI: 10.1158/1078-0432.CCR-18-1156</mixed-citation></ref><ref id="B75"><label>75.</label><mixed-citation>Demetri G.D., Antonescu C.R., Bjerkehagen B. et al. Diagnosis and management of tropomyosin receptor kinase (TRK) fusion sarcomas: expert recommendations from the World Sarcoma Network. Ann Oncol 2020;31(11):1506–17. DOI: 10.1016/j.annonc.2020.08.2232</mixed-citation></ref><ref id="B76"><label>76.</label><mixed-citation>Brčić I., Godschachner T.M., Bergovec M. et al. Broadening the spectrum of NTRK rearranged mesenchymal tumors and usefulness of pan-TRK immunohistochemistry for identification of NTRK fusions. Mod Pathol 2021;34(2):396–407. DOI: 10.1038/s41379-020-00657-x</mixed-citation></ref><ref id="B77"><label>77.</label><mixed-citation>Castillon M., Kammerer-Jacquet S.F., Cariou M. et al. Fluorescent in situ hybridization must be preferred to pan-TRK immunohistochemistry to diagnose NTRK3-rearranged gastrointestinal stromal tumors (GIST). Appl Immunohistochem Mol Morphol 2021;29(8):626–34. DOI: 10.1097/PAI.0000000000000933</mixed-citation></ref><ref id="B78"><label>78.</label><mixed-citation>Drilon A. TRK inhibitors in TRK fusion-positive cancers. Ann Oncol 2019;30(8):viii23–30. DOI: 10.1093/annonc/mdz282</mixed-citation></ref><ref id="B79"><label>79.</label><mixed-citation>Hong D.S., DuBois S.G., Kummar S. et al. Larotrectinib in patients with TRK fusion-positive solid tumors: a pooled analysis of three phase 1/2 clinical trials. Lancet Oncol 2020;21(4):531–40. DOI: 10.1016/S1470-2045(19)30856-3</mixed-citation></ref><ref id="B80"><label>80.</label><mixed-citation>Drilon A., Ou S.I., Cho B.C. et al. Repotrectinib (TPX-0005) is a next-generation ROS1/TRK/ALK inhibitor that potently inhibits ROS1/TRK/ALK solvent-front mutations. Cancer Discov 2018;8(10):1227–36. DOI: 10.1158/2159-8290.CD-18-0484</mixed-citation></ref><ref id="B81"><label>81.</label><mixed-citation>Charo L.M., Burgoyne A.M., Fanta P.T. et al. A Novel PRKAR1B-BRAF fusion in gastrointestinal stromal tumor guides adjuvant treatment decision-making during pregnancy. J Natl Compr Canc Netw 2018;16(3):238–42. DOI: 10.6004/jnccn.2017.7039</mixed-citation></ref><ref id="B82"><label>82.</label><mixed-citation>Torrence D., Xie Z., Zhang L. et al. Gastrointestinal stromal tumors with BRAF gene fusions. A report of two cases showing low or absent KIT expression resulting in diagnostic pitfalls. Genes Chromosomes Cancer 2021;60(12):789–95. DOI: 10.1002/gcc.22991</mixed-citation></ref><ref id="B83"><label>83.</label><mixed-citation>Vanden Bempt I., Vander Borght S., Sciot R. et al. Comprehensive targeted next-generation sequencing approach in the molecular diagnosis of gastrointestinal stromal tumor. Genes Chromosomes Cancer 2021;60(4):239–49. DOI: 10.1002/gcc.22923</mixed-citation></ref><ref id="B84"><label>84.</label><mixed-citation>Cho W.C., Shin Y.K., Na Y.S. et al. The role of novel fusion genes in human GIST cell lines derived from imatinib-resistant GIST patients: a therapeutic potential of fusion gene. Biochem Biophys Res Commun 2020;529(3):699–706. DOI: 10.1016/j.bbrc.2020.05.174</mixed-citation></ref><ref id="B85"><label>85.</label><mixed-citation>Kang G., Yun H., Sun C.H. et al. Integrated genomic analyses identify frequent gene fusion events and VHL inactivation in gastrointestinal stromal tumors. Oncotarget 2016;7(6):6538–51. DOI: 10.18632/oncotarget.3731</mixed-citation></ref><ref id="B86"><label>86.</label><mixed-citation>Wang S., Sun R.Z., Han Q. et al. Genomic study of chinese quadruple-negative GISTs using next-generation sequencing technology. Appl Immunohistochem Mol Morphol 2021;29(1):34–41. DOI: 10.1097/PAI.0000000000000842</mixed-citation></ref><ref id="B87"><label>87.</label><mixed-citation>Debiec-Rychter M., Sciot R., Le Cesne A. et al. KIT mutations and dose selection for imatinib in patients with advanced gastrointestinal stromal tumors. Eur J Cancer 2006;42(8):1093–103. DOI: 10.1016/j.ejca.2006.01.030</mixed-citation></ref><ref id="B88"><label>88.</label><mixed-citation>Corless C.L., Ballman K.V., Antonescu C.R. et al. Pathologic and molecular features correlate with long-term outcome after adjuvant therapy of resected primary GI stromal tumor: the ACOSOG Z9001 trial. J Clin Oncol 2014;32(15):1563–70. DOI: 10.1200/JCO.2013.51.2046</mixed-citation></ref><ref id="B89"><label>89.</label><mixed-citation>Heinrich M.C., Maki R.G., Corless C.L. et al. Primary and secondary kinase genotypes correlate with the biological and clinical activity of sunitinib in imatinib-resistant gastrointestinal stromal tumor. J Clin Oncol 2008;26(33):5352–59. DOI: 10.1200/JCO.2007.15.7461</mixed-citation></ref><ref id="B90"><label>90.</label><mixed-citation>Ben-Ami E., Barysauskas C.M., von Mehren M. et al. Long-term follow-up results of the multicenter phase II trial of regorafenib in patients with metastatic and/or unresectable GI stromal tumor after failure of standard tyrosine kinase inhibitor therapy. Ann Oncol 2016;27(9):1794–9. DOI: 10.1093/annonc/mdw2289.</mixed-citation></ref><ref id="B91"><label>91.</label><mixed-citation>Vallilas C., Sarantis P., Kyriazoglou A. et al. Gastrointestinal stromal tumors (GISTs): novel therapeutic strategies with immunotherapy and small molecules. Int J Mol Sci 2021;22(2):493. DOI: 10.3390/ijms22020493</mixed-citation></ref><ref id="B92"><label>92.</label><citation-alternatives><mixed-citation xml:lang="en">Boichuk S.V., Abduraeva S.A., Kopnin P. B. Immunotherapy of gastrointestinal stromal tumors: current view and future directions. Uspekhi molekulyarnoy onkologii = Advances in Molecular Oncology. 2023;10(2):17–29. DOI: 10.17650/2313-805X-2023-10-2-17-29</mixed-citation><mixed-citation xml:lang="ru">Бойчук С.В., Абдураева С.А., Копнин П.Б. Иммунотерапия гастроинтестинальных стромальных опухолей: состояние вопроса и перспективы. Успехи молекулярной онкологии 2023;10(2):17–29. DOI: 10.17650/2313-805X-2023-10-2-17-29</mixed-citation></citation-alternatives></ref><ref id="B93"><label>93.</label><mixed-citation>Yamaguchi U., Nakayama R., Honda K. et al. Distinct gene expression-defined classes of gastrointestinal stromal tumor. J Clin Oncol 2008;26(25):4100–8. DOI: 10.1200/JCO.2007.14.2331</mixed-citation></ref><ref id="B94"><label>94.</label><mixed-citation>Bertucci F., Finetti P., Mamessier E. et al. PD-L1 expression is an independent prognostic factor in localized GIST. Oncoimmunology 2015;4(5):e1002729. DOI: 10.1080/2162402X.2014.1002729</mixed-citation></ref><ref id="B95"><label>95.</label><mixed-citation>Fiorino E., Merlini A., D’Ambrosio L. et al. Integrated antitumor activities of cellular immunotherapy with CIK lymphocytes and interferons against KIT/PDGFRA wild type GIST. Int J Mol Sci 2022;23(18):10368. DOI: 10.3390/ijms231810368</mixed-citation></ref></ref-list></back></article>
