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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="other" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Advances in Molecular Oncology</journal-id><journal-title-group><journal-title xml:lang="en">Advances in Molecular Oncology</journal-title><trans-title-group xml:lang="ru"><trans-title>Успехи молекулярной онкологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2313-805X</issn><issn publication-format="electronic">2413-3787</issn><publisher><publisher-name xml:lang="en">Publishing House ABV Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">682</article-id><article-id pub-id-type="doi">10.17650/2313-805X-2024-11-2-116-129</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>RESEARCH ARTICLES</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ЭКСПЕРИМЕНТАЛЬНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="article-type"><subject></subject></subj-group></article-categories><title-group><article-title xml:lang="en">Modulation of homologous recombination gene activity in breast tumor cells in an <italic>in vitro</italic> model</article-title><trans-title-group xml:lang="ru"><trans-title>Модуляция активности генов гомологичной рекомбинации в опухолевых клетках молочной железы в модели <italic>in vitro</italic></trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7419-4512</contrib-id><name-alternatives><name xml:lang="en"><surname>Tsyganov</surname><given-names>M. M.</given-names></name><name xml:lang="ru"><surname>Цыганов</surname><given-names>М. М.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>634009; 5 Kooperativny Line; 634050; 2 Moscow Trakt; Tomsk </p></bio><bio xml:lang="ru"><p>Матвей Михайлович Цыганов</p><p>634009; пер. Кооперативный 5; 634050; Московский тракт, 2; Томск</p></bio><email>TsyganovMM@yandex.ru</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3297-1680</contrib-id><name-alternatives><name xml:lang="en"><surname>Frolova</surname><given-names>A. A.</given-names></name><name xml:lang="ru"><surname>Фролова</surname><given-names>А. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>634009; 5 Kooperativny Line; Tomsk</p></bio><bio xml:lang="ru"><p>634009; пер. Кооперативный 5; Томск</p></bio><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9022-7764</contrib-id><name-alternatives><name xml:lang="en"><surname>Kravtsova</surname><given-names>E. A.</given-names></name><name xml:lang="ru"><surname>Кравцова</surname><given-names>Е. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>634009; 5 Kooperativny Line; Tomsk</p></bio><bio xml:lang="ru"><p>634009; пер. Кооперативный 5; Томск</p></bio><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-2716-3075</contrib-id><name-alternatives><name xml:lang="en"><surname>Tsydenova</surname><given-names>I. A.</given-names></name><name xml:lang="ru"><surname>Цыденова</surname><given-names>И. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>634009; 5 Kooperativny Line; Tomsk</p></bio><bio xml:lang="ru"><p>634009; пер. Кооперативный 5; Томск</p></bio><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-8815-2786</contrib-id><name-alternatives><name xml:lang="en"><surname>Ibragimova</surname><given-names>M. K.</given-names></name><name xml:lang="ru"><surname>Ибрагимова</surname><given-names>М. К.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>634009; 5 Kooperativny Line; 634050; 2 Moscow Trakt; Tomsk </p></bio><bio xml:lang="ru"><p>634009; пер. Кооперативный 5; 634050; Московский тракт, 2; Томск</p></bio><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Cancer Research Institute, Tomsk National Research Medical Center of the Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">Научно-исследовательский институт онкологии ФГБНУ «Томский национальный исследовательский медицинский центр Российской академии наук»</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Siberian State Medical University, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">ФГБОУ ВО «Сибирский государственный медицинский университет» Минздрава России</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-05-15" publication-format="electronic"><day>15</day><month>05</month><year>2024</year></pub-date><volume>11</volume><issue>2</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>116</fpage><lpage>129</lpage><history><date date-type="received" iso-8601-date="2024-06-28"><day>28</day><month>06</month><year>2024</year></date><date date-type="accepted" iso-8601-date="2024-06-28"><day>28</day><month>06</month><year>2024</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Tsyganov M.M., Frolova A.A., Kravtsova E.A., Tsydenova I.A., Ibragimova M.K.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Цыганов М.М., Фролова А.А., Кравцова Е.А., Цыденова И.А., Ибрагимова М.К.</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Tsyganov M.M., Frolova A.A., Kravtsova E.A., Tsydenova I.A., Ibragimova M.K.</copyright-holder><copyright-holder xml:lang="ru">Цыганов М.М., Фролова А.А., Кравцова Е.А., Цыденова И.А., Ибрагимова М.К.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://umo.abvpress.ru/jour/article/view/682">https://umo.abvpress.ru/jour/article/view/682</self-uri><abstract xml:lang="en"><p><bold>Introduction.</bold> It has been established that the presence of homologous recombination deficiency in a breast tumor is associated with the effectiveness of treatment. But despite the high chemosensitivity of the tumor to DNA-damaging agents, complete pathological responses to treatment are very rare. And this process may be based on a change in the somatic status of <italic>BRCA1</italic>, that is, a reversion and return of the wild-type allele occurs and the DNA repair function is restored.</p><p><bold>Aim. </bold>To evaluate changes in the presence of chromosomal aberrations and the expression profile of the main genes of homologous recombination in cell models of breast cancer under the influence of cisplatin and docetaxel.</p><p><bold>Materials and methods.</bold> The study was conducted on breast cancer tumor cell cultures: MCF-7, MDA-MB-231 and MDA-MB-468. A cell model of drug resistance was obtained for two drugs: cisplatin and docetaxel. RNA and DNA were isolated from cell suspension using the RNeasy Plus Mini Kit and QIAamp DNA Mini Kit (Qiagen, Germany), respectively. The expression level of homologous recombination genes was assessed using reverse transcription polymerase chain reaction. To assess the presence of chromosomal aberrations, microarray analysis was performed on DNA chips.</p><p><bold>Results.</bold> Restoration of normal copy number for the <italic>BRCA1</italic>,<italic> CDK12</italic>,<italic> CHEK1</italic> and <italic>RAD51D</italic> genes in MCF-7 under the influence of cisplatin was shown. For BRCA2 and PALB2, amplifications were detected. A statistically significant increase in the expression of the <italic>BRCA1</italic> (<italic>p</italic> = 0.04), <italic>BRCA2</italic> (<italic>p</italic> = 0.02), <italic>PALB2</italic> (<italic>p</italic> = 0.01) and <italic>RAD51D</italic> (<italic>p</italic> = 0.05) genes was also shown. MDAMB-231 shows that all identified loci with deletions, where the <italic>BRCA2, BARD1, CHEK2, PALB2</italic> and <italic>RAD54L</italic> genes are localized, are restored to normal copy number by cisplatin. The appearance of amplifications was registered for <italic>BRCA1, BRIP1, FANCL, RAD51B, PARP1.</italic> A similar result was shown for docetaxel. An increase in the expression level is typical for the genes <italic>BRCA1</italic> (<italic>p</italic> = 0.02), <italic>BRCA2</italic> (<italic>p</italic> = 0.02), <italic>CHEK2</italic> (<italic>p</italic> = 0.05), <italic>FANCL</italic> (<italic>p</italic> = 0.04), <italic>PALB2</italic> (<italic>p</italic> = 0.05), <italic>RAD51C</italic> (<italic>p</italic> = 0.02), <italic>PARP1</italic> (<italic>p</italic> = 0.02), which corresponds to the appearance of amplifications. In the MDA-MB-468 cell culture, an increase in the copy number of only the <italic>BRCA1</italic> gene is observed. The effect of docetaxel has no effect on this cell culture. The level of <italic>BRCA1</italic> expression increases in direct proportion to the duration of drug action.</p><p><bold>Conclusion.</bold> Thus, the study showed that under the influence of cisplatin, reversion of not only homologous recombination gene mutations, but also other disorders can occur.</p></abstract><trans-abstract xml:lang="ru"><p><bold>Введение.</bold> Установлено, что наличие дефицита гомологичной рекомбинации в опухоли молочной железы связано с эффективностью лечения. при этом, несмотря на высокую химиочувствительность опухоли к ДНк-повреждающим агентам, полные патологические ответы на лечение очень редки. В основе этого процесса может лежать изменение соматического статуса <italic>BRCA1</italic>, т. е. происходят реверсия и возвращение аллеля дикого типа и восстановление функции репарации ДНк.</p><p><bold>Цель исследования</bold> – оценить изменения хромосомных аберраций и экспрессионного профиля основных генов гомологичной рекомбинации в клеточных моделях рака молочной железы под действием цисплатина и доцетаксела.</p><p><bold>Материалы и методы.</bold> исследование проведено на культурах опухолевых клеток рака молочной железы MCF-7, MDA-MB-231 и MDA-MB-468. модель лекарственной устойчивости на клетках была получена для двух препаратов – цисплатина и доцетаксела. из клеточной суспензии РНк и ДНк выделяли с помощью наборов RNeasy Plus Mini Kit и QIAamp DNA Mini Kit (Qiagen, Германия) соответственно. Уровень экспрессии генов гомологичной рекомбинации оценивали с использованием обратно-транскриптазной количественной полимеразной цепной реакции. Для определения наличия хромосомных аберраций проводили микроматричный анализ на ДНк-чипах.</p><p><bold>Результаты.</bold> показано восстановление нормальной копийности генов <italic>BRCA1</italic>, <italic>CDK12</italic>, <italic>CHEK1 </italic>и <italic>RAD51D</italic> в MCF-7 под действием цисплатина. Для <italic>BRCA2 </italic>и<italic> PALB2 </italic>обнаружено появление амплификаций. Также продемонстрировано статистически значимое увеличение экспрессии генов <italic>BRCA1</italic> (<italic>p</italic> = 0,04), <italic>BRCA2</italic> (<italic>p</italic> = 0,02), <italic>PALB2</italic> (<italic>p</italic> = 0,01) и <italic>RAD51D</italic> (<italic>p</italic> = 0,05). В MDA-MB-231 показано, что все выявленные локусы с делециями, где локализованы гены <italic>BRCA2</italic>,<italic> BARD1</italic>,<italic> CHEK2</italic>,<italic> PALB2 </italic>и<italic> RAD54L</italic>, под действием цисплатина восстанавливаются до нормальной копийности. появление амплификаций зарегистрировано для генов <italic>BRCA1</italic>, <italic>BRIP1</italic>, <italic>FANCL</italic>,<italic> RAD51B</italic> и <italic>PARP1. </italic>Аналогичный результат показан для доцетаксела. Увеличение уровня экспрессии характерно для генов <italic>BRCA1</italic> (<italic>p</italic> = 0,02), <italic>BRCA2</italic> (<italic>p</italic> = 0,02), <italic>CHEK2</italic> (<italic>p</italic> = 0,05)<italic>, FANCL</italic> (<italic>p</italic> = 0,04)<italic>, PALB2</italic> (<italic>p</italic> = 0,05)<italic>, RAD51C</italic> (<italic>p</italic> = 0,02)<italic> </italic>и<italic> PARP1</italic> (<italic>p</italic> = 0,02),<italic> </italic>что соответствует<italic> </italic>появлению амплификаций. В клеточной культуре MDA-MB-468 наблюдалось увеличение копийности только гена <italic>BRCA1</italic>. Действие доцетаксела полностью не оказывало влияния на данную клеточную культуру. Уровень экспрессии гена <italic>BRCA1</italic> повышался прямо пропорционально длительности действия препарата.</p><p><bold>Заключение.</bold> Таким образом, проведенное исследование показало, что под действием цисплатина может происходить реверсия не только мутаций генов гомологичной рекомбинации, но и других нарушений.</p></trans-abstract><kwd-group xml:lang="en"><kwd>breast cancer</kwd><kwd>cell cultures</kwd><kwd>BRCAness</kwd><kwd>homologous recombination deficiency</kwd><kwd>expression</kwd><kwd>deletion</kwd><kwd>amplification</kwd><kwd>reversion</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>рак молочной железы</kwd><kwd>клеточные культуры</kwd><kwd>BRCAness</kwd><kwd>дефицит гомологичной рекомбинации</kwd><kwd>экспрессия</kwd><kwd>делеция</kwd><kwd>амплификация</kwd><kwd>реверсия</kwd></kwd-group><funding-group><funding-statement xml:lang="en">This research was funded by the Russian Science Foundation (grant No. 22-15-00169)</funding-statement><funding-statement xml:lang="ru">Исследование выполнено при финансовой поддержке Российского научного фонда (грант № 22-15-00169)</funding-statement></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Turner N.C., Reis-Filho J.S. 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