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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="other" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Advances in Molecular Oncology</journal-id><journal-title-group><journal-title xml:lang="en">Advances in Molecular Oncology</journal-title><trans-title-group xml:lang="ru"><trans-title>Успехи молекулярной онкологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2313-805X</issn><issn publication-format="electronic">2413-3787</issn><publisher><publisher-name xml:lang="en">Publishing House ABV Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">753</article-id><article-id pub-id-type="doi">10.17650/2313-805X-2025-12-1-8-13</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>REVIEW ARTICLES</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ОБЗОРНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="article-type"><subject></subject></subj-group></article-categories><title-group><article-title xml:lang="en">Signaling cascades are targets for breast cancer therapy in the light of genome – wide sequencing data</article-title><trans-title-group xml:lang="ru"><trans-title>Сигнальные каскады – мишени для терапии рака молочной железы в свете данных полногеномного секвенирования</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7693-3777</contrib-id><name-alternatives><name xml:lang="en"><surname>Gulyaeva</surname><given-names>L. F.</given-names></name><name xml:lang="ru"><surname>Гуляева</surname><given-names>Л. Ф.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p> Lyudmila Fyodorovna Gulyaeva </p><p>2/12 Timakova St., Novosibirsk 630060, Russia </p></bio><bio xml:lang="ru"><p>Людмила Федоровна Гуляева  </p><p>Россия, 630060 Новосибирск, ул. Тимакова, 2/12</p></bio><email>lfgulyaeva@gmail.com</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-8950-5368</contrib-id><name-alternatives><name xml:lang="en"><surname>Filipenko</surname><given-names>M. L.</given-names></name><name xml:lang="ru"><surname>Филипенко</surname><given-names>М. Л.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>8 Akademika Lavrentieva St., Novosibirsk 630090, Russia </p></bio><bio xml:lang="ru"><p>Россия, 630060 Новосибирск, ул. Академика  Лаврентьева, 8 </p></bio><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3898-4127</contrib-id><name-alternatives><name xml:lang="en"><surname>Kushlinskii</surname><given-names>N. E.</given-names></name><name xml:lang="ru"><surname>Кушлинский</surname><given-names>Н. Е.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>24 Kashirskoe Shosse, Moscow 115522, Russia </p></bio><bio xml:lang="ru"><p>115522 Москва, Каширское шоссе, 24 </p></bio><xref ref-type="aff" rid="aff3"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Federal Research Center for Fundamental and Translational Medicine</institution></aff><aff><institution xml:lang="ru">ФГБНУ «Федеральный исследовательский центр фундаментальной и трансляционной медицины»</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Institute of Chemical Biology and Fundamental Medicine of the Siberian Branch of the Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">ФГБУ «Институт химической биологии и фундаментальной медицины Сибирского отделения Российской академии наук»</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">N.N. Blokhin National Medical Research Center of Oncology, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">ФГБУ «Национальный медицинский исследовательский центр онкологии им. Н.Н. Блохина» Минздрава России</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2025-01-15" publication-format="electronic"><day>15</day><month>01</month><year>2025</year></pub-date><volume>12</volume><issue>1</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>8</fpage><lpage>13</lpage><history><date date-type="received" iso-8601-date="2025-04-13"><day>13</day><month>04</month><year>2025</year></date><date date-type="accepted" iso-8601-date="2025-04-13"><day>13</day><month>04</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2025, Gulyaeva L.F., Filipenko M.L., Kushlinskii N.E.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2025, Гуляева Л.Ф., Филипенко М.Л., Кушлинский Н.Е.</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="en">Gulyaeva L.F., Filipenko M.L., Kushlinskii N.E.</copyright-holder><copyright-holder xml:lang="ru">Гуляева Л.Ф., Филипенко М.Л., Кушлинский Н.Е.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://umo.abvpress.ru/jour/article/view/753">https://umo.abvpress.ru/jour/article/view/753</self-uri><abstract xml:lang="en"><p>Development of next generation sequencing technologies allows to identify a large number of genetic landscape types in various cancers including breast cancer. Frequent genetic abnormalities identified using whole genome sequencing are point mutations (missense, nonsense mutations), deletions, insertions, which usually lead to activation of protooncogenes and inactivation of tumor suppressor genes. Genome sequencing of malignant tumors allowed, on one hand, to identify driver mutations in carcinogenic genes in different organs, and on the other – to use mutated genes for targeted therapy. Study of biological functions of these genes from the point of view of their contribution to carcinogenesis allows to better understand its mechanism. In this review, signaling cascades of breast cancer with identified mutated genes – targets for therapy – are analyzed.</p></abstract><trans-abstract xml:lang="ru"><p>Развитие технологий секвенирования нового поколения позволяет выявлять множество вариантов генетического ландшафта в различных видах рака, в том числе рака молочной железы. Одним из частых генетических повреждений, обнаруживаемых с использованием полногеномного секвенирования, являются точечные мутации (миссенс-, нонсенсмутации), делеции, инсерции, приводящие, как правило, к активации протоонкогенов и инактивации опухолевых супрессоров. Секвенирование генома злокачественных опухолей позволило, с одной стороны, выявить драйверные мутации в генах канцерогенеза того или иного органа, а с другой, использовать мутантные гены как мишени для таргетной терапии. исследование биологических функций таких генов с точки зрения их вклада в канцерогенез помогает лучше понять его механизмы. В данном обзоре проанализированы сигнальные каскады рака молочной железы с выявленными мутантными генами – мишенями для таргетной терапии.</p></trans-abstract><kwd-group xml:lang="en"><kwd>breast cancer</kwd><kwd>DNA sequencing</kwd><kwd>signaling cascade</kwd><kwd>targeted therapy</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>рак молочной железы</kwd><kwd>ДНк-секвенирование</kwd><kwd>сигнальный каскад</kwd><kwd>таргетная терапия</kwd></kwd-group><funding-group><funding-statement xml:lang="en">The work was carried out within the framework of the budget project of the Federal Research Center for Fundamental and Translational Medicine on the topic “Post-genomic high-tech studies of the mechanisms of development of socially significant diseases and stress-induced conditions”.</funding-statement><funding-statement xml:lang="ru">Работа выполнена в рамках бюджетного проекта ФГБНУ «Федеральный исследовательский центр фундаментальной и трансляционной медицины» по теме «Постгеномные высокотехнологичные исследования механизмов развития социально значимых заболеваний и стресс-индуцированных состояний».</funding-statement></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Marti J.L.G., Hyder T., Nasrazadani A. et al. The evolving landscape of HER2-directed breast cancer therapy. Curr Treat Options Oncol 2020;21(10):82. DOI: 10.1007/s11864-020-00780-6</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Tarantino P., Viale G., Press M.F. et al. ESMO expert consensus statements (ECS) on the definition, diagnosis, and management of HER2-low breast cancer. Ann Oncol 2023;34(8):645–59. DOI: 10.1016/j.annonc.2023.05.008</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Ferguson K.M. Structure-based view of epidermal growth factor receptor regulation. Annu Rev Biophys 2008;37:353–73. DOI: 10.1146/annurev.biophys.37.032807.125829</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Li X., Zhao L., Chen C. et al. Can EGFR be a therapeutic target in breast cancer? Biochim Biophys Acta Rev Cancer 2022;1877(5):188789. DOI: 10.1016/j.bbcan.2022.188789</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Raghav K.P.S., Moasser M.M. Molecular pathways and mechanisms of HER2 in cancer therapy. Clin Cancer Res 2023;29(13):2351–61. DOI: 10.1158/1078-0432.CCR-22-0283</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Lyu H., Han A., Polsdofer E. et al. Understanding the biology of HER3 receptor as a therapeutic target in human cancer. Acta Pharm Sin B 2018;8(4):503–10. DOI: 10.1016/j.apsb.2018.05.010</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Kilroy M.K., Park S., Feroz W. et al. HER3 alterations in сancer and potential clinical implications. Cancers (Basel) 2022;14(24):6174. DOI: 10.3390/cancers14246174</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Papa F., Grinda T., Rassy E. et al. Long road towards effective HER3 targeting in breast cancer. Cancer Treat Rev 2024;129:102786. DOI: 10.1016/j.ctrv.2024.102786</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Uliano J., Corvaja C., Curigliano G., Tarantino P. Targeting HER3 for cancer treatment: a new horizon for old target. ESMO Open 2023;8(1):100790. DOI: 10.1016/j.esmoop.2023.100790</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Hoxhaj G., Manning B.D. The PI3K-AKT network at the interface of oncogenic signalling and cancer metabolism. Nat Rev Cancer 2020;20(2):74–88. DOI: 10.1038/s41568-019-0216-7</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Mishra R., Alanazi S., Yuan L. et al. Activating HER3 mutations in breast cancer. Oncotarget 2018;9(45):27773–88. DOI: 10.18632/oncotarget.25576</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Murugan A.K., Grieco M., Tsuchida N. RAS mutations in human cancers: roles in precision medicine. Semin Cancer Biol 2019;59:23–35. DOI: 10.1016/j.semcancer.2019.06.007</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Kamian S., Ashoori H., Vahidian F., Davoudi S. The relevance of common K-RAS gene mutations and K-RAS mRNA expression with clinicopathological findings and survival in breast cancer. Asian Pac J Cancer Prev 2023;24(3):909–14. DOI: 10.31557/APJCP.2023.24.3.909</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Banys-Paluchowski M., Milde-Langosch K., Fehm T. et al. Clinical relevance of H-RAS, K-RAS, and N-RAS mRNA expression in primary breast cancer patients. Breast Cancer Res Treat 2020;179(2):403–14. DOI: 10.1007/s10549-019-05474-8</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Hossain M.A. Targeting the RAS upstream and downstream signaling pathway for cancer treatment. Eur J Pharmacol 2024;979:176727. DOI: 10.1016/j.ejphar.2024.176727</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Wang L., Lu Q., Jiang K. et al. BRAF V600E mutation in triplenegative breast cancer: a case report and literature review. Oncol Res Treat 2022;45(1–2):54–61. DOI: 10.1159/000520453</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Khojasteh Poor F., Keivan M., Ramazii M. et al. Mini review: the FDA-approved prescription drugs that target the MAPK signaling pathway in women with breast cancer. Breast Dis 2021;40(2):51–62. DOI: 10.3233/BD-201063</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Miricescu D., Totan A., Stanescu-Spinu I.I. et al. PI3K/AKT/mTOR signaling pathway in breast cancer: from molecular landscape to clinical aspects. Int J Mol Sci 2020;22(1):173. DOI: 10.3390/ijms22010173</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Hinz N., Jücker M. Distinct functions of AKT isoforms in breast cancer: a comprehensive review. Cell Commun Signal 2019;17(1):154. DOI: 10.1186/s12964-019-0450-3</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Nunnery S.Е., Mayer I.A. Targeting the PI3K/AKT/mTOR pathway in hormone-positive breast cancer. Drugs 2020;80(16):1685–97. DOI: 10.1007/s40265-020-01394-w</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Shen L.S., Jin X.Y., Wang X.M. et al. Advances in endocrine and targeted therapy for hormone-receptor-positive, human epidermal growth factor receptor 2-negative advanced breast cancer. Chin Med J 2020;133:1099–108. DOI: 10.1097/CM9.0000000000000745</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Mosele F., Stefanovska B., Lusque A. et al. Outcome and molecular landscape of patients with PIK3CA-mutated metastatic breast cancer. Ann Oncol 2020;31(3):377–86. DOI: 10.1016/j.annonc.2019.11.006</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Ertay A., Liu H., Liu D. et al. WDHD1 is essential for the survival of PTEN-inactive triple-negative breast cancer. Cell Death Dis 2020;11(11):1001. DOI: 10.1038/s41419-020-03210-5</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Hanker A.B., Sudhan D.R., Arteaga C.L. Overcoming endocrine resistance in breast cancer. Cancer Cell 2020;37(4):496–513. DOI: 10.1016/j.ccell.2020.03.009</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Endicott S.J., Ziemba Z.J., Beckmann L.J. et al. Inhibition of class I PI3K enhances chaperone-mediated autophagy. J Cell Biol 2020;219(12):202001031. DOI: 10.1083/jcb.202001031</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Rugo H.S., Raskina K., Schrock A.B. et al. Biology and targetability of the extended spectrum of PIK3CA mutations detected in breast carcinoma. Clin Cancer Res 2023;29(6):1056–67. DOI: 10.1158/1078-0432.CCR-22-2115</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Riobo-Del Galdo N.A., Montero Á.L, Wertheimer E.V. Role of Hedgehog signaling in breast cancer: pathogenesis and therapeutics. Cells 2019;8(4):375. DOI: 10.3390/cells8040375</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Habib J.G., O’Shaughnessy J.A. The hedgehog pathway in triple-negative breast cancer. Cancer Med 2016;5(10):2989–3006. DOI: 10.1002/cam4.833</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Patel D.K., Kesharwani R., Verma A. et al. Scope of Wnt signaling in the precise diagnosis and treatment of breast cancer. Drug Discov Today 2023;28(7):103597. DOI: 10.1016/j.drudis.2023.103597</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Xu X., Zhang M., Xu F., Jiang S. Wnt signaling in breast cancer: biological mechanisms, challenges and opportunities. Mol Cancer 2020;19(1):165. DOI: 10.1186/s12943-020-01276-5</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Harbeck N., Penault-Llorca F., Cortes J. et al. Breast cancer. Nat Rev Dis Primers 2019;5(1):66. DOI: 10.1038/s41572-019-0111-2</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Theodosiou A., Arhondakis S., Baumann M., Kossida S. Evolutionary scenarios of Notch proteins. Mol Biol Evol 2009;26(7):1631–40. DOI: 10.1093/molbev/msp075</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Krishna B.M., Jana S., Singhal J. et al. Notch signaling in breast cancer: from pathway analysis to therapy. Cancer Lett 2019;461:123–31. DOI: 10.1016/j.canlet.2019.07.012</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Huang P., Chen A., He W. et al. BMP-2 induces EMT and breast cancer stemness through Rb and CD44. Cell Death Discov 2017;3:17039. DOI: 10.1038/cddiscovery.2017.39</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Nilendu P., Kumar A., Kumar A. et al. Breast cancer stem cells as last soldiers eluding therapeutic burn: a hard nut to crack. Int J Cancer 2018;142(1):7–17. DOI: 10.1002/ijc.30898</mixed-citation></ref></ref-list></back></article>
